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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAAACAAACAGATTCTACCTGGCTCTCTGTGCCTTAACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAGgtctgtgccacaagaactataattatcttttacttcaaacattctctggtctgatcctcatattttgtggttcag

Basic information

species Oryza sativa
transcript LOC_Os12g13130.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g13130.4 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G095323_T03 (Zea mays), 5'ss of exon 8
AAACAAACAAACAGATTCTACCTGGCTCTCTGTGCCTTAACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAGgtctgtgccacaagaactataat--tatcttttacttcaaacattctctggtctgatcctcatattttgtggttcag
|||||||||||||| || ||||| |||||||     || ||  |  |||||||||| ||||||||||| || || ||| |||||||||||| ||    |       | | |   ||||||||      | ||||  | ||    |  ||||||||||   || |||
AAACAAACAAACAGGTTATACCTCGCTCTCTCCATTTTGACGCTGATACTTTTGCCGCTGTTCTATCTAATTGTGTTCCTGCACCAGAGgtttgcttaatctactttgtgaacatatcttttgtgctgagcatttccagg----acactcatatttttctgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88690274|gb|CI734353.1|CI734353
EST:     ACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAG                         GGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCA
genomic: ACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAGgtctgtgcca ... tgtggttcagGGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCA
EST: gi|86841250|gb|CI342973.1|CI342973
EST:     CACTGTTCTATCTCATAGTATTCTTGCACCAGAG                         GGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCA
genomic: CACTGTTCTATCTCATAGTATTCTTGCACCAGAGgtctgtgcca ... tgtggttcagGGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCA
EST: gi|88849353|gb|CI087875.1|CI087875
EST:     ACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAG                         GGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCA
genomic: ACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAGgtctgtgcca ... tgtggttcagGGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCA
EST: gi|88688437|gb|CI732013.1|CI732013
EST:     ACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAG                         GGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCA
genomic: ACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAGgtctgtgcca ... tgtggttcagGGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCA
EST: gi|29645805|gb|CB650812.1|CB650812
EST:     ACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAG                         GGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCA
genomic: ACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAGgtctgtgcca ... tgtggttcagGGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCA
EST: gi|29645769|gb|CB650776.1|CB650776
EST:     ACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAG                         GGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCA
genomic: ACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAGgtctgtgcca ... tgtggttcagGGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCA
EST: gi|88260579|gb|CI362872.1|CI362872
EST:     ACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAG                         GGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCA
genomic: ACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAGgtctgtgcca ... tgtggttcagGGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCA
EST: gi|88222581|gb|CI222537.1|CI222537
EST:     ACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAG                         GGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCA
genomic: ACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAGgtctgtgcca ... tgtggttcagGGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCA