1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGCTTGGTTGCAAAGGACAAATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaatgccttgattactactttctgttaaaatctttggtcatctcagcaacatcatacttatatatctcttaacatgccatcatatag
species | Oryza sativa |
transcript | LOC_Os12g05650.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGGTGCCAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|27577338|gb|CB000033.1|CB000033
genomic: AGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|88509817|gb|CI437323.1|CI437323
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGGTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|88552099|gb|CI482219.1|CI482219
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: GAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|88490918|gb|CI428190.1|CI428190
genomic: GAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: ATTCCATGTGAGTTACAGAGGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|88506169|gb|CI433675.1|CI433675
genomic: ATTCCATGTGAGTTACAGA-GGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|88508659|gb|CI436165.1|CI436165
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCCGAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGANACAGATGAAEST: gi|86255014|gb|CI017134.1|CI017134
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|88279515|gb|CI400515.1|CI400515
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: CAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|87026460|gb|CI252414.1|CI252414
genomic: CAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|88241583|gb|CI241432.1|CI241432
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|14192305|gb|AU184516.1|AU184516
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|86823074|gb|CI253990.1|CI253990
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|86823113|gb|CI254016.1|CI254016
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|88547845|gb|CI478173.1|CI478173
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: TGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|88661073|gb|CI449923.1|CI449923
genomic: TGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: GGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|88240853|gb|CI238704.1|CI238704
genomic: GGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|55408732|gb|CV721108.1|CV721108
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|86599021|gb|CI355638.1|CI355638
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|88516411|gb|CI444065.1|CI444065
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|86540849|gb|CI181055.1|CI181055
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATGATCTCCGGAGGCCCGAGACAGATGAAEST: gi|8335146|gb|BE040130.1|BE040130
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|5900741|gb|AU078396.1|AU078396
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|89188397|gb|CI115646.1|CI115646
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCTAAATTGAACAGCTCATTATCTCAG GTGCTCGAGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|86259447|gb|CI008124.1|CI008124
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|88205440|gb|CI205289.1|CI205289
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|88277171|gb|CI397973.1|CI397973
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: GCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|88526843|gb|CI454933.1|CI454933
genomic: GCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: GCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|89165417|gb|CI102507.1|CI102507
genomic: GCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|86251590|gb|CI016879.1|CI016879
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAEST: gi|88469811|gb|CI407082.1|CI407082
genomic: AATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
EST: TGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAG GTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
genomic: TGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaat ... catcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTTGGTTGCAAAGGACAAATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgtattgcaatgccttgattactactttctgttaaaatctttggtcatctcagcaacatcatacttatatatctcttaacatgccatcatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA