1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAATgtatgcatataattaatcttgatggtatttgttctaatgttttgtgtaaacatagcttggtgtgcacgggcttatgttttcactaacataaatgaggctg...
species | Oryza sativa |
transcript | LOC_Os12g03190.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAAT GTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAGEST: gi|86490550|gb|CI133183.1|CI133183
genomic: TGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAATgtatgcatat ... ttatcttcagGTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAG
EST: TGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAAT GTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAGEST: gi|7273923|gb|AU083467.1|AU083467
genomic: TGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAATgtatgcatat ... ttatcttcagGTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAG
EST: TGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAAT GTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAGEST: gi|86435122|gb|CI106355.1|CI106355
genomic: TGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAATgtatgcatat ... ttatcttcagGTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAG
EST: TCAGCATGGAGAATATTAAT GTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAGEST: gi|86499082|gb|CI141715.1|CI141715
genomic: TCAGCATGGAGAATATTAATgtatgcatat ... ttatcttcagGTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAG
EST: TGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAAT GTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAGEST: gi|88990011|gb|CI018861.1|CI018861
genomic: TGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAATgtatgcatat ... ttatcttcagGTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAG
EST: GGATCAGCATGGAGAATATTAAT GTTGAGGGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAGEST: gi|86539123|gb|CI179329.1|CI179329
genomic: GGATCAGCATGGAGAATATTAATgtatgcatat ... ttatcttcagGTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAG
EST: TGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAAT GTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAGEST: gi|86413783|gb|CI067990.1|CI067990
genomic: TGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAATgtatgcatat ... ttatcttcagGTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAG
EST: AGCATGGAGAATATTAAT GTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAG
genomic: AGCATGGAGAATATTAATgtatgcatat ... ttatcttcagGTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAATgtatgcatataattaatcttgatggtatttgttctaatgttttgtgtaaacatagcttggtgtgcacgggcttatgttttcactaacataaatgaggctg
- - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - GGAGAA