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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAATTCTCTTTGGAGGTGAGGATGGAAAAGGGAAGAAACTACATGACCTTCATATGTTTGACCTGAAATCTTCAACATGGCTTCCTTTGAATTATAAgtgagtcatccttgtctagaagtagaactcagaaatatgcatatcaatagagactaaagaaagttttttcagttgatcattaggcttattatctgaaaat...

Basic information

species Oryza sativa
transcript LOC_Os11g43590.4
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g43590.4 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G070553_T01 (Zea mays), 5'ss of exon 9
TTTTAATTCTCTTTGGAGGTGAGGATGGAAAAGGGAAGAAACTACATGACCTTCATATGTTTGACCTGAAATCTTCAACATGGCTTCCTTTGAATTATAAgtgagtcatccttgtctagaagtagaactcagaaatatg-catatcaatagagactaaagaaagttttttcagttgatcattaggcttattatctgaaaat
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TTTTAATTCTCTTTGGAGGTGAAGATGCCAAAGGGAAGAAACTACATGACCTTCATATGTTTGATCTGAAGTCATTAACATGGCTTCCTCTGAACTATAAgtaagctattctagtctagaattcaacgatagtgtaatatcattactaaagaaagaaaagaaagcatgga-ggctaattagtttcctcttggtcatttcac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25797320|gb|CA753281.1|CA753281
EST:     CTTCATATGTTTGACCTGAAATCTTCAACATGGCTTCCCTTGAATTATAA                         AGGTGCTGGACCTTCTCCAAGATCCATTCATGTGGCTGCTCTGTATGATGA
genomic: CTTCATATGTTTGACCTGAAATCTTCAACATGGCTTCCTTTGAATTATAAgtgagtcatc ... actgttctagAGGTGCTGGACCTTCTCCAAGATCCAATCATGTGGCTGCTCTGTATGATGA