1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGAAGTTGCGGTGAATCGTCGAGTAGATACAAAATCATACACATCCCTCCATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGgtttgtcatgttctataatgcacatatatcagcactcctgtaaacagagtattgttctgccaatcgaagtatgtttaccatattgtcaatgctccttgacctgatggaaattcttccttacttcag
species | Oryza sativa |
transcript | LOC_Os11g40080.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAG GAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGATEST: gi|29667119|gb|CB663394.1|CB663394
genomic: ATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGgtttgtcatg ... cttacttcagGAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGAT
EST: ATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAG GAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGATEST: gi|58689879|gb|CK078566.1|CK078566
genomic: ATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGgtttgtcatg ... cttacttcagGAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGAT
EST: ATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAG GAGGACTACAATACTTGGAAEST: gi|58693464|gb|CK082151.1|CK082151
genomic: ATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGgtttgtcatg ... cttacttcagGAGGACTACAATACTTGGAA
EST: ATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAG GAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGATEST: gi|87021180|gb|CI271987.1|CI271987
genomic: ATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGgtttgtcatg ... cttacttcagGAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGAT
EST: ATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAG GAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGAT
genomic: ATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGgtttgtcatg ... cttacttcagGAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGTTGCGGTGAATCGTCGAGTAGATACAAAATCATACACATCCCTCCATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGgtttgtcatgttctataatgcacatatatcagcactcctgtaaacagagtattgttctgccaatcgaagtatgtttaccatattgtcaatgctccttgacctgatggaaattcttccttacttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG