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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAACAACTGGAGACCCGAAGGGTGTGATAATCACAAACAGAGCTCTAATTGCCGGTGTTATGACCACAGAACATCTTCTGAAAGTGACAGACAAAGTGgtaagcctcttaaatcaaacacctgcaggctgcagttctcaataactaatgaagaattgatcatagcttgtccattaaatatcaatatctttatatatttcctgagatgttattctgaccatagttaatactaatatttatgcag

Basic information

species Oryza sativa
transcript LOC_Os11g35400.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g35400.4 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G104847_T01 (Zea mays), 5'ss of exon 9
TGGAACAACTGGAGACCCGAAGGGTGTGATAATCACAAACAGAGCTCTAATTGCCGGTGTTATGACCACAGAACATCTTCTGAAAGTGACAGACAAAGTGgtaagcctcttaaatcaaacacctgcaggctgcagttctcaataactaatgaagaattgatcatagcttgtccattaaatatcaatatctttatatatttcctgagatgttattctgaccatagttaatactaatatttatgcag
 |||||||||||||| || || ||||||||||||||||||| |||| |  |||| |||||||||||||||||||| || || |||| ||| || ||||||||||             |  | ||     |||||      ||  |  ||  | || |  | ||||    |||  |    ||  | | ||||   ||  ||||    | | | || | || | |                      
CGGAACAACTGGAGATCCCAAAGGTGTGATAATCACAAACAAAGCTATCGTTGCTGGTGTTATGACCACAGAACACCTCCTCAAAGAGACCGATAAAGTGgtaa-------------agtatcttttatctgca-----taaatatcaagcatgattccagcatattaggtctgt--ggtactagtttcttctgatgcttccc---acgcttttttaacaaca----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58659138|gb|CK047818.1|CK047818
EST:     TTGCCGGTGTTATGACCACAGAACATCTTCTGAAAGTGACAGACAAAGTG                         GTGGCTGAAGATGATTCCTACTTTTCCTATCTCCCATTAGCTCACATATTT
genomic: TTGCCGGTGTTATGACCACAGAACATCTTCTGAAAGTGACAGACAAAGTGgtaagcctct ... atttatgcagGTGGCTGAAGATGATTCCTACTTTTCCTATCTCCCATTAGCTCACATATTT
EST: gi|58609844|gb|CK037877.1|CK037877
EST:     TTGCCGGTGTTATGACCACAGAACATCTTCTGAAAGTGACAGACAAAGTG                         GTGGCTGAAGATGATTCCTACTTTTCCTATCTCCCATTAGCTCACATATTT
genomic: TTGCCGGTGTTATGACCACAGAACATCTTCTGAAAGTGACAGACAAAGTGgtaagcctct ... atttatgcagGTGGCTGAAGATGATTCCTACTTTTCCTATCTCCCATTAGCTCACATATTT