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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATATCAAGAAGCTGGTTTACCACTTTGGTTGCGACCCTATGAAGTTATCGTCACATCTGCATATACAGCGCTAATTGAGACTATTCCTGATACGgtagtcatctctccattatgattaagttagctttctgaatttctgtgcatactgaaagttattagcttggcctttttttgtcatgctactgcag

Basic information

species Oryza sativa
transcript LOC_Os11g10420.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g10420.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G176698_T01 (Zea mays), 5'ss of exon 9
ATATATATCAAGAAGCTGGTTTACCACTTTGGTTGCGACCCTATGAAGTTATCGTCACATCTGCATATACAGCGCTAATTGAGACTATTCCTGATACGgtagtcatctctccattatgattaagttagctttctgaatttctgtgcatactgaaagttattagcttggcctt----tttttgtcatgctactgcag
|||||||||||||||||||||||||||| ||| |||| || |||||||| || || || || || |||||||| ||||||||||| || ||||||||||| |  | ||   | |  | | ||  ||| | |  | |||  || |   |  | | |  | || | ||   ||     ||| | || || ||||||||
ATATATATCAAGAAGCTGGTTTACCACTATGGCTGCGGCCTTATGAAGTAATTGTTACTTCAGCTTATACAGCACTAATTGAGACCATCCCTGATACGgtgggtaccttatcttcttaacta--ttaccatcattaataccttttggtctttatatatgtttggttctactacaagtttatttcttgttactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29682738|gb|CB679013.1|CB679013
EST:     TTATCGTCACATCTGCATATACAGCGCTAATTGAGACTATTCCTGATACG                         GCGTCAATTCATTCCATCAAGAGTCGGTTCCCCGATATCACAAGTCTCCGT
genomic: TTATCGTCACATCTGCATATACAGCGCTAATTGAGACTATTCCTGATACGgtagtcatct ... gctactgcagGCGTCAATTCATTCCATCAAGAGTCGGTTCCCCGATATCACAAGTCTCCGT
EST: gi|88852251|gb|CI374019.1|CI374019
EST:     TTATCGTCACATCTGCATATACAGCGCTAATTGAGACTATTCCTGATACG                         GCGTCAATTCATTCCATCAAGAGTCGGTTCCCCGATATCACAAGTCTCCGT
genomic: TTATCGTCACATCTGCATATACAGCGCTAATTGAGACTATTCCTGATACGgtagtcatct ... gctactgcagGCGTCAATTCATTCCATCAAGAGTCGGTTCCCCGATATCACAAGTCTCCGT