1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAGCCCCTCCTAGGCCTACTGGGGTTTCATTTTCCCCACTTCTTAATGTGCACCATGAAGACGATGAGCCAGAAGACGAGTTCTCTGTTCTTTCCCGCAGgcaagctatattagttttccctattagtaccctttactaattatttctcatacatgctattgctattctaagctttggatggttgtggcaacatcagctg...
species | Oryza sativa |
transcript | LOC_Os11g09329.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CACCATGAAGACGATGAGCCAGAAGACGAGTTCTCTGTTCTTTCCCGCAG GTCTGCAAGGGATGGCACAGCAGCACAGGGCAATCTACCTTCTGCTCCAAAEST: gi|218501499|gb|FG952265.1|FG952265
genomic: CACCATGAAGACGATGAGCCAGAAGACGAGTTCTCTGTTCTTTCCCGCAGgcaagctata ... tgttctgtagGTCTGCAAGGGATGGCACAGCAGCACAGGGCAATCTACCTTCTGCTCCAAA
EST: AGACGATGAGCCAGAAGACGAGTTCTCCGTGCTTTCCCGCAG GTCTGCAAGGGATGGCACAGCAACACAGGGCAATCTACCTTCTGCTCCAAAEST: gi|58593728|gb|CF992036.1|CF992036
genomic: AGACGATGAGCCAGAAGACGAGTTCTCTGTTCTTTCCCGCAGgcaagctata ... tgttctgtagGTCTGCAAGGGATGGCACAGCAGCACAGGGCAATCTACCTTCTGCTCCAAA
EST: ATGAAGACGATGAGCCAGAAGACGAGTTCTCCGTGCTTTCCCGCAG GTCTGCAAGGGATGGCACAGCAACACAGGGCAATCTACCTTCTGCTCCAAAEST: gi|38475873|gb|CF960006.1|CF960006
genomic: ATGAAGACGATGAGCCAGAAGACGAGTTCTCTGTTCTTTCCCGCAGgcaagctata ... tgttctgtagGTCTGCAAGGGATGGCACAGCAGCACAGGGCAATCTACCTTCTGCTCCAAA
EST: CACCATGAAGACGATGAGCCAGAAGACGAGTTCTCCGTGCTTTCCCGCAG GTCTGCAAGGGATGGCACAGCAACACAGGGCAATCTACCTTCTGCTCCAAAEST: gi|27578129|gb|CB000824.1|CB000824
genomic: CACCATGAAGACGATGAGCCAGAAGACGAGTTCTCTGTTCTTTCCCGCAGgcaagctata ... tgttctgtagGTCTGCAAGGGATGGCACAGCAGCACAGGGCAATCTACCTTCTGCTCCAAA
EST: ACGATGAGCCAGAAGACGAGTTCTCTGTTCTTTCCCGCAG GTCTGCAAGGGATGGCACAGCAGCACAGGGCAATCTACCTTCTGCTCCAAAEST: gi|396941515|gb|HO188724.1|HO188724
genomic: ACGATGAGCCAGAAGACGAGTTCTCTGTTCTTTCCCGCAGgcaagctata ... tgttctgtagGTCTGCAAGGGATGGCACAGCAGCACAGGGCAATCTACCTTCTGCTCCAAA
EST: CACCATGAAGACGATGAGCCAGAAGACGAGTTCTCCGTGCTTTCCCGCAG GTCTGCAAGGGATGGCACAGCAACACAGGGCAATCTACCTTCTGCTCCAAA
genomic: CACCATGAAGACGATGAGCCAGAAGACGAGTTCTCTGTTCTTTCCCGCAGgcaagctata ... tgttctgtagGTCTGCAAGGGATGGCACAGCAGCACAGGGCAATCTACCTTCTGCTCCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCCCCTCCTAGGCCTACTGGGGTTTCATTTTCCCCACTTCTTAATGTGCACCATGAAGACGATGAGCCAGAAGACGAGTTCTCTGTTCTTTCCCGCAGgcaagctatattagttttccctattagtaccctttactaattatttctcatacatgctattgctattctaagctttggatggttgtggcaacatcagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA