Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGCAGCCTATCTTTTCACCAAGGACAAGAAACTGCAAGAGGAATTTGTGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtcctcctccctgaaaccctgaactgaaagtaacaacatttgctcacagcatgctgatctgattgattttcatctgctttccaccacag

Basic information

species Oryza sativa
transcript LOC_Os11g08300.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g08300.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G060800_T02 (Zea mays), 5'ss of exon 8
ACTTGCAGCCTATCTTTTCACCAAGGACAAGAAACTGCAAGAGGAATTTGTGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtcctcctccctgaaacc-ctgaactgaaagtaa----caacatttgctcacagcatgctgatctga--ttgattttcatctgctttc-caccacag
||| || ||||| |||||||||||| | | ||| ||||||||||| |||||| | |  ||||| |||||||| ||||||||||| ||   ||| || |||||||||  | || |  |   ||  | || || ||||| | |     || |       | |   |  ||| || |  || | |  | || | | |  || | |||
ACTAGCCGCCTACCTTTTCACCAAGAATAGGAAGCTGCAAGAGGAGTTTGTGGCAAGCGTCCCTGCAGGAGGGATGCTTGTAAACGACACTGCGCTACATgtaagttctgcttcctcagaaactctctcaaatgaaaatgaactgtaaaagcaaaaaaaaatgttttgaactaacttttactcccgtccggtcttgcaacccag

upper sequence: LOC_Os11g08300.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G118800_T01 (Zea mays), 5'ss of exon 9
ACTTGCAGCCTATCTTTTCACCAAGGACAAGAAACTGCAAGAGGAATTTGTGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtcctcctccctgaaaccctgaactgaaagtaacaacatttgctcacagcatgctgatctgattgattttcatctgctttccaccacag
 ||||| ||||| |||||||||||| ||||||| ||||| ||||| |||||| |  | || || |||||||| |||||||| || ||    |  || ||||||||| ||  |     |  |   |  ||    |||   | | | | | || ||      |   ||  |                           
GCTTGCCGCCTACCTTTTCACCAAGAACAAGAAGCTGCAGGAGGAGTTTGTGGCGGACGTGCCTGCAGGAGGGATGCTTGTGAACGACACCGTGCTACATgtaagtcgtagtaaaaaccaa---ctggatgcaaaatccaaatcttcttctaacttggctcccgtcccag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86890206|gb|CI321383.1|CI321383
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGGCGGAGTCGGCGACAGCGGGATCGG
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTT-GGCGGAGTCGGCGACAGCGGGATCGG
EST: gi|86849392|gb|CI297833.1|CI297833
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|38468735|gb|CF952866.1|CF952866
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|86878350|gb|CI319601.1|CI319601
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|29639823|gb|CB644832.1|CB644832
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|29659085|gb|CB655360.1|CB655360
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|58587745|gb|CF986053.1|CF986053
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|88994430|gb|CI117384.1|CI117384
EST:     CTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: CTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|29643719|gb|CB648726.1|CB648726
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|29665741|gb|CB662016.1|CB662016
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|86832729|gb|CI345144.1|CI345144
EST:     AAATGATGTTG-CCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: AAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|86903496|gb|CI322979.1|CI322979
EST:     -GTCCAATGTCCCAGCA-GAGGAATGCTT-TAAATGAT-TTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTC-GCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|86417498|gb|CI031707.1|CI031707
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|218497882|gb|FG958703.1|FG958703
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|29621581|gb|CB626592.1|CB626592
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCGTGCAT                         TTTGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|58687760|gb|CK076447.1|CK076447
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|29680880|gb|CB677155.1|CB677155
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|29670820|gb|CB667095.1|CB667095
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|88222623|gb|CI222579.1|CI222579
EST:     TGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|88964437|gb|CI055133.1|CI055133
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|86882644|gb|CI327324.1|CI327324
EST:     CCCACCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTCCCATTTGCCGGAGTCGGCGACAGCGGGATCGGC
genomic: CCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|29666336|gb|CB662611.1|CB662611
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|18388629|gb|BM421827.1|BM421827
EST:     GTCCAATGTTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCC-ATCCGCACCT-CCATTT-GCGGAGTCGGCGACAGCGGGATCGGC
genomic: GTCCAATG-TCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|29633959|gb|CB638968.1|CB638968
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|86908680|gb|CI318986.1|CI318986
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGC-GGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|88957464|gb|CI095405.1|CI095405
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|29665740|gb|CB662015.1|CB662015
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|29660176|gb|CB656451.1|CB656451
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|88956891|gb|CI009110.1|CI009110
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|86860190|gb|CI322055.1|CI322055
EST:     TGTCCAATGTCCCAGCAGGA-GAATGCTTGTAAATGATGTTG-CCTGCAT                         CTCGCCAATCCGCACCTGCCATTT-GCTGAGTC-GCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|58588762|gb|CF987070.1|CF987070
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|86825271|gb|CI359952.1|CI359952
EST:     TTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|88253544|gb|CI352170.1|CI352170
EST:     CTTGTAAATGATGTTG-CCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: CTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|29660181|gb|CB656456.1|CB656456
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|88249499|gb|CI249348.1|CI249348
EST:     GTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: GTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|86418566|gb|CI032775.1|CI032775
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|29645893|gb|CB650900.1|CB650900
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|88907922|gb|CI090518.1|CI090518
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|86871151|gb|CI328353.1|CI328353
EST:     TTTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCGGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCCGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|94362477|gb|CI052338.1|CI052338
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|86869652|gb|CI322138.1|CI322138
EST:     GTCCCAGCAGGAGGAATGC-TGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: GTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|88835135|gb|CI370438.1|CI370438
EST:     GAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: GAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|89169921|gb|CI039198.1|CI039198
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|29658062|gb|CB654337.1|CB654337
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|88249060|gb|CI248909.1|CI248909
EST:     AGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTTGGCGACAGCGGGATCGGC
genomic: AGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|88225797|gb|CI225713.1|CI225713
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|29677331|gb|CB673606.1|CB673606
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|88249086|gb|CI248935.1|CI248935
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|33675312|gb|CF303551.1|CF303551
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|29683211|gb|CB679486.1|CB679486
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|86839820|gb|CI343731.1|CI343731
EST:     GGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGG
genomic: GGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATC-GG
EST: gi|86870622|gb|CI323498.1|CI323498
EST:     GAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: GAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|86859909|gb|CI321902.1|CI321902
EST:     AGGAATGCTTGTAAATGATGTTG-CCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: AGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|58588330|gb|CF986638.1|CF986638
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
EST: gi|86831182|gb|CI297451.1|CI297451
EST:     TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCAT                         CTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC
genomic: TGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtc ... tccaccacagCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTTGCAGCCTATCTTTTCACCAAGGACAAGAAACTGCAAGAGGAATTTGTGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGTTGCCCTGCATgtaagtagtcctcctccctgaaaccctgaactgaaagtaacaacatttgctcacagcatgctgatctgattgattttcatctgctttccaccacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA