1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTTGGAGATAGCTGACTTCATCAAGGGACTTGGATTGACCATCCTAAGAGGTGCAATGGAAGCCCGTAAAAGTAAAATTTGGGCACGGTTTACTGTTGAGgtaatatattcaaatatctttagcattatattctgttggttttctaaatctgaagtaatctgatattcttttgcactgcgagctgaatggatttctatcacctgccatctcttctggccttatagctttgctgcttgcagctttgcatccaacaaacaaaacctgaatgatcatcttcatgcag
species | Oryza sativa |
transcript | LOC_Os11g06010.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTGCAATGGAAGCCCGTAAAAGTAAAATTTGGGCACGGTTTACTGTTGAG GCAAACAGGGACGTGACCCGAATGGAGATCTTTCTCTCGCTTGTGCGCTTAEST: gi|86478271|gb|CI120904.1|CI120904
genomic: GTGCAATGGAAGCCCGTAAAAGTAAAATTTGGGCACGGTTTACTGTTGAGgtaatatatt ... cttcatgcagGCAAACAGGGACGTGACCCGAATGGAGATCTTTCTCTCGCTTGTGCGCTTA
EST: GTGCAATGGAAGCCCGTAAAAGTAAAATTTGGGCACGGTTTACTGTTGAG GCAAACAGGGACGTGACCCGAATGGAGATCTTTCTCTCGCTTGTGCGCTTAEST: gi|58604755|gb|CK015283.1|CK015283
genomic: GTGCAATGGAAGCCCGTAAAAGTAAAATTTGGGCACGGTTTACTGTTGAGgtaatatatt ... cttcatgcagGCAAACAGGGACGTGACCCGAATGGAGATCTTTCTCTCGCTTGTGCGCTTA
EST: GTGCAATGGAAGCCCGTAAAAGTAAAATTTGGGCACGGTTTACTGTTGAG GCAAACAGGGACGTGACCCGAATGGAGATCTTTCTCTCGCTTGTGCGCTTAEST: gi|58595288|gb|CF993596.1|CF993596
genomic: GTGCAATGGAAGCCCGTAAAAGTAAAATTTGGGCACGGTTTACTGTTGAGgtaatatatt ... cttcatgcagGCAAACAGGGACGTGACCCGAATGGAGATCTTTCTCTCGCTTGTGCGCTTA
EST: GTGCAATGGAAGCCCGTAAAAGTAAAATTTGGGCACGGTTTACTGTTGAG GCAAACAGGGACGTGACCCGAATGGAGATCTTTCTCTCGCTTGTGCGCTTAEST: gi|86480716|gb|CI123349.1|CI123349
genomic: GTGCAATGGAAGCCCGTAAAAGTAAAATTTGGGCACGGTTTACTGTTGAGgtaatatatt ... cttcatgcagGCAAACAGGGACGTGACCCGAATGGAGATCTTTCTCTCGCTTGTGCGCTTA
EST: GTGCAATGGAAGCCCGTAAAAGTAAAATTTGGGCACGGTTTACTGTTGAG GCAAACAGGGACGTGACCCGAATGGAGATCTTTCTCTCGCTTGTGCGCTTAEST: gi|86827892|gb|CI274835.1|CI274835
genomic: GTGCAATGGAAGCCCGTAAAAGTAAAATTTGGGCACGGTTTACTGTTGAGgtaatatatt ... cttcatgcagGCAAACAGGGACGTGACCCGAATGGAGATCTTTCTCTCGCTTGTGCGCTTA
EST: GTGCAATGGAAGCCCGTAGAAGTAAAATTTGGGCACGGTTTACTGTTGAG GCAAACAGGGACGTGACCCGAATGGAGATCTTTCTCTCGCTTGTGCGCTTA
genomic: GTGCAATGGAAGCCCGTAAAAGTAAAATTTGGGCACGGTTTACTGTTGAGgtaatatatt ... cttcatgcagGCAAACAGGGACGTGACCCGAATGGAGATCTTTCTCTCGCTTGTGCGCTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGAGATAGCTGACTTCATCAAGGGACTTGGATTGACCATCCTAAGAGGTGCAATGGAAGCCCGTAAAAGTAAAATTTGGGCACGGTTTACTGTTGAGgtaatatattcaaatatctttagcattatattctgttggttttctaaatctgaagtaatctgatattcttttgcactgcgagctgaatggatttctatcacctgccatctcttctggccttatagctttgctgcttgcagctttgcatccaacaaacaaaacctgaatgatcatcttcatgcag
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