1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaaatctaattgtctacaactcttgattataaactaacagttgaacagaactactagatatatggacaacattttttagaaaatggattaaac...
species | Oryza sativa |
transcript | LOC_Os11g04030.4 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88532104|gb|CI461565.1|CI461565
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88520442|gb|CI448096.1|CI448096
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88283253|gb|CI404699.1|CI404699
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88507466|gb|CI434972.1|CI434972
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: GTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88848658|gb|CI087180.1|CI087180
genomic: GTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88219437|gb|CI218997.1|CI218997
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88217007|gb|CI216711.1|CI216711
genomic: ACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: CACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88841567|gb|CI080823.1|CI080823
genomic: CACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|29678071|gb|CB674346.1|CB674346
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTTT ANNNNNNNGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88488062|gb|CI425333.1|CI425333
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: GGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|86260630|gb|CI066503.1|CI066503
genomic: GGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88523558|gb|CI451395.1|CI451395
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|86494925|gb|CI137558.1|CI137558
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|29680055|gb|CB676330.1|CB676330
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|86870704|gb|CI323580.1|CI323580
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88531586|gb|CI458682.1|CI458682
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|89186840|gb|CI052253.1|CI052253
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACCAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88518921|gb|CI446575.1|CI446575
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: GGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88253816|gb|CI352442.1|CI352442
genomic: GGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: GGCCAATGTCACTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88842694|gb|CI081950.1|CI081950
genomic: GGCC-ATGTC-CTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCAC-AAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|87006928|gb|CI275236.1|CI275236
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|29644402|gb|CB649409.1|CB649409
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88484549|gb|CI421820.1|CI421820
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88414248|gb|CI533618.1|CI533618
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGG--CAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88537107|gb|CI464921.1|CI464921
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: TGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|87025643|gb|CI250137.1|CI250137
genomic: TGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88486927|gb|CI424198.1|CI424198
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|29679866|gb|CB676141.1|CB676141
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTTT ATTTTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88537059|gb|CI464870.1|CI464870
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATNTCCTTGTTCAAGGCTGTTGCACCAGGTGGCGCAGGTGTTCT ATTCTCTGGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|88841121|gb|CI080575.1|CI080575
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGEST: gi|89193059|gb|CI050357.1|CI050357
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaaatctaattgtctacaactcttgattataaactaacagttgaacagaactactagatatatggacaacattttttagaaaatggattaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG