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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAAAAGTTTTGGAACCTCTTTCACTTGCAACCAATGCGTGATCAAAAGgtactatagtgacagacatgggaaaagtttctgctgagttattcaacatatttgtctacaattcttttgtatgtaatttgacatgagtccaatttgcctgtggatcag

Basic information

species Oryza sativa
transcript LOC_Os11g01140.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g01140.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G001457_T02 (Zea mays), 5'ss of exon 8
GTAAAAAGTTTTGGAACCTCTTTCACTTGCAACCAATGCGTGATCAAAAGgtactatagtgacagacatgggaaaagtttctgctgagttattcaacatatttgtctacaattcttttgtatgtaatttgacatgagtccaatttgcctgtggatcag
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GTAAGAAATTCTGGAACCTCTTTCACTTGCAGCCTATGCGTGATCAGAAGgtactgtaataagagatatgaga-----tttt------ttacgtagtat-ttggtttggaactatttcatatg--atttaagatgcatccattttgatggttgattag

upper sequence: LOC_Os12g01140.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA12G07890.2 (Glycine max), 5'ss of exon 10
GTAAAAAGTTTTGGAACCTCTTTCACTTGCAACCAATGCGTGATCAAAAGgtactata-gtgacagacatgggaaaagtttctgctgagttattcaacatatttgtctacaattcttttgtatgtaat--ttgacatgagtccaatttgcct-gtggatcag
|||||||||| |||||| | ||||| ||||| || ||||||||||| |||||||  |   ||| |   |         ||| |  | | | ||  | |  ||||  | |   ||||     |    ||  || || ||  ||   ||| | | ||  | |||
GTAAAAAGTTCTGGAACTTGTTTCATTTGCAGCCTATGCGTGATCAGAAGgtacagtttatgataacaacttttgttttttgtagttaatcat--atcccatttaccaaaccttctaacagaaaccatggttaacttgtttctctttttctttgtttaacag

upper sequence: LOC_Os12g01140.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA13G40550.1 (Glycine max), 5'ss of exon 8
GTAAAAAGTTTTGGAACCTCTTTCACTTGCAACCAATGCGTGATCAAAAGgtactata-gtgacagacatgggaaaa-gtt---tctgctgagttattca---acatatttgtctacaattcttttgtatgtaatttgacatgagtccaatttgcctgtggatcag---------------------------
| || ||||| |||||||| ||||| |||||||| ||||||||||| |||||||      ||| ||   |  ||| | |||   ||   | || | ||      || ||||    | | |  ||     | || ||| |||| |    | |  |  |||                                  
GAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAGAAGgtacagcgtatgatagttttctgaagatgttaaatcctttaagatcttggcgtgcaaatttaataatattatttccccctatattttaacattaactgagtacgagtgttagcttttgtctcttttccttcttggtttaacag