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TTAATGGGCAGCTGGAGTTTTACAATGTTGATGAGCTTGAGACGATGGCAACGGGTGAACATTTCATGGCTACTGACATTATGTGGGATCCTACTGGAAGgtaagcctatacttggtcaggaaatttgtagtcctcaccatgacactggcactttattatgtcaaattttcaaaaaccaagtatcatatgccctacgaaa...
species | Oryza sativa |
transcript | LOC_Os10g41960.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACGGGTGAACATTTCATGGCTACTGACATTATGTGGGATCCTACTGGAAG ATATCTTGCATCTGCAGTTACCTCAGTCCATGAAATGGAGAATGGTTTCCAEST: gi|88998539|gb|CI259872.1|CI259872
genomic: ACGGGTGAACATTTCATGGCTACTGACATTATGTGGGATCCTACTGGAAGgtaagcctat ... tttttgttagATATCTTGCATCTGCAGTTACCTCAGTCCATGAAATGGAGAATGGTTTCCA
EST: CTGACATTATGTGGGATCNTACTGGAAG ATATCTTGCATCTGCAGTTACCTCAGTCCATGAAATGGAGAATGGTTTCCAEST: gi|58682866|gb|CK071553.1|CK071553
genomic: CTGACATTATGTGGGATCCTACTGGAAGgtaagcctat ... tttttgttagATATCTTGCATCTGCAGTTACCTCAGTCCATGAAATGGAGAATGGTTTCCA
EST: ACGGGTGAACATTTCATGGCTACTGACATTATGTGGGATCCTACTGGAAG ATATCTTGCATCTGCAGTTACCTCAGTCCATGAAATGGAGAATGGTTTCCAEST: gi|86480631|gb|CI123264.1|CI123264
genomic: ACGGGTGAACATTTCATGGCTACTGACATTATGTGGGATCCTACTGGAAGgtaagcctat ... tttttgttagATATCTTGCATCTGCAGTTACCTCAGTCCATGAAATGGAGAATGGTTTCCA
EST: ACTGACATTATGTGCGATCCTACTGGAAG ATATCTTGCATCTGCAGTTACCTCAGTCCATGAAATGGAGAATGGTTTCCCEST: gi|87021533|gb|CI274140.1|CI274140
genomic: ACTGACATTATGTGGGATCCTACTGGAAGgtaagcctat ... tttttgttagATATCTTGCATCTGCAGTTACCTCAGTCCATGAAATGGAGAATGGTTTCCA
EST: GAACATTTCATGGCTACTGACATTATGTGGGATCCTACTGGAAG ATATCTTGCATCTGCAGTTACCTCAGTCCATGAAATGGAGAATGGTTTCCAEST: gi|86481284|gb|CI123917.1|CI123917
genomic: GAACATTTCATGGCTACTGACATTATGTGGGATCCTACTGGAAGgtaagcctat ... tttttgttagATATCTTGCATCTGCAGTTACCTCAGTCCATGAAATGGAGAATGGTTTCCA
EST: ATTTCATGGCTACTGACATTATGTGGGATCCTACTGGAAG ATATCTTGCATCTGCAGTTACCTCAGTCCATGAAATGGAGAATGGTTTCCAEST: gi|58658718|gb|CK047398.1|CK047398
genomic: ATTTCATGGCTACTGACATTATGTGGGATCCTACTGGAAGgtaagcctat ... tttttgttagATATCTTGCATCTGCAGTTACCTCAGTCCATGAAATGGAGAATGGTTTCCA
EST: ACGGGTGAACATTTCATGGCTACTGACATTATGTGGGATCCTACTGGAAG ATATCTTGCATCTGCAGTTACCTCAGTCCATGAAATGGAGAATG
genomic: ACGGGTGAACATTTCATGGCTACTGACATTATGTGGGATCCTACTGGAAGgtaagcctat ... tttttgttagATATCTTGCATCTGCAGTTACCTCAGTCCATGAAATGGAGAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAATGGGCAGCTGGAGTTTTACAATGTTGATGAGCTTGAGACGATGGCAACGGGTGAACATTTCATGGCTACTGACATTATGTGGGATCCTACTGGAAGgtaagcctatacttggtcaggaaatttgtagtcctcaccatgacactggcactttattatgtcaaattttcaaaaaccaagtatcatatgccctacgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcacc