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GTTCTAGACTTTGGTGGTTCCAAGTTTGCAGTGAGGTTGCCTATTTTCAAGTGGCACCCAAAAACGATAGCATTCGCTCTACAGAGATCAATACAGGgtaatgtcctatgtttttttttccatctctgtatgcttattctttttcagtcaagccttgggttgggtacctgtttaagaaattgtcatgtttcgattac...
species | Oryza sativa |
transcript | LOC_Os10g36780.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAAGTGGCACCCAAAAACGATAGCATTCGCTCTACAGAGATCAATACAGG GTACCATTTGGACCTATGCAGAAATGTCTTTGGTGAAAGGTGTTTATCCTGEST: gi|88198073|gb|CI197923.1|CI197923
genomic: CAAGTGGCACCCAAAAACGATAGCATTCGCTCTACAGAGATCAATACAGGgtaatgtcct ... atatctccagGTACCATTTGGACCTATGCAGAAATGTCTTTGGTGAA-GGTGTTTATCCTG
EST: ACCCAAAAACGATAGCATTCGCTCTACAGAGATCAATACAGG GTACCATTTGGACCTATGCAGAAATGTCTTTGGTGAAGGTGTTTATCCTGAEST: gi|58689723|gb|CK078410.1|CK078410
genomic: ACCCAAAAACGATAGCATTCGCTCTACAGAGATCAATACAGGgtaatgtcct ... atatctccagGTACCATTTGGACCTATGCAGAAATGTCTTTGGTGAAGGTGTTTATCCTGA
EST: CAAGTGGCACCCAAAAACGATAGCATTCGCTCTACAGAGATCAATACAGG GTACCATTTGGACCTATGCAGAAATGTCTTTGGTGAAGGTGTTTATCCTGA
genomic: CAAGTGGCACCCAAAAACGATAGCATTCGCTCTACAGAGATCAATACAGGgtaatgtcct ... atatctccagGTACCATTTGGACCTATGCAGAAATGTCTTTGGTGAAGGTGTTTATCCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTAGACTTTGGTGGTTCCAAGTTTGCAGTGAGGTTGCCTATTTTCAAGTGGCACCCAAAAACGATAGCATTCGCTCTACAGAGATCAATACAGGgtaatgtcctatgtttttttttccatctctgtatgcttattctttttcagtcaagccttgggttgggtacctgtttaagaaattgtcatgtttcgattac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA