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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGGAGTGTTCCAGAAGTGCTTCGGCCACTCTACGAGTCATCTAGGGTAGTTGCTCAGAAAATGACTACTGCAgtaagttcctataacatttcctgatctgcttttatcttgacaattcaatgatattctctcttgttacatacatatatatgaagaaatgcccactgtttcc...

Basic information

species Oryza sativa
transcript LOC_Os10g33960.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g33960.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G469551_T01 (Zea mays), 5'ss of exon 10
GCTTGGAGTGTTCCAGAAGTGCTTCGGCCACTCTACGAGTCATCTAGGGTAGTTGCTCAGAAAATGACTACTGCAgtaagttcctataacatttcctgatctgcttttatc--ttgacaattcaatg-atattctctcttgttacatacatatatatgaagaaatgcccactgtttcc
|||||||||||||| ||||| ||||| || ||||||||||| ||| |||| ||||| ||||| ||||| ||  |||| |||| ||  | |  || | ||||||| | |  |  |  | |||  |||   ||        || |    ||    | ||||       |           
GCTTGGAGTGTTCCTGAAGTTCTTCGTCCCCTCTACGAGTCGTCTCGGGTGGTTGCCCAGAAGATGACAACCACAgtgagttgctgcagc-ctttcagatctgcatatgacattccataatataatttgtaggacggagtgctggcgactcccacatgagtggggtctgggcaagg--

upper sequence: LOC_Os10g33960.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA11G20520.1 (Glycine max), 5'ss of exon 9
GCTTGGAGTGTTCCAGAAGTGCTTCGGCCACTCTACGAGTCATCTAGGGTAGTTGCTCAGAAAATGACTACTGCAgtaagttcctataacatttcctgatctgcttttatcttgacaattcaat---gatattctctcttgttacatacatatatatgaagaaatgcc-cactgtttcc
|| |||||||| ||||||||| | |||||||| || || ||||| | ||| ||||||||||||||||| | |||||||||||| | || ||||   | || |  ||     || | |    |||   |||    | | |      |  || |    |||  ||||     | | | |  
GCATGGAGTGTGCCAGAAGTGTTGCGGCCACTTTATGAATCATCCAAGGTGGTTGCTCAGAAAATGACAATTGCAgtaagttcat-tatcattaagtcatataattgggattt-atagccaaatttggatggaatgtgtaaactgaaccacaatcttgagcaaatatagtattatat--

upper sequence: LOC_Os10g33960.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA12G08080.1 (Glycine max), 5'ss of exon 9
GCTTGGAGTGTTCCAGAAGTGCTTCGGCCACTCTACGAGTCATCTAGGGTAGTTGCTCAGAAAATGACTACTGCAgtaagttcctataacatttcctgatctgcttttatcttgacaattcaatgatattctctcttg--ttacatacatatatatgaagaa-atgcccactgtttcc-
|| |||||||| ||||||||| | |||||||| || || ||||| | ||| ||||||||||||||||| | ||||||||||||    |  |||      ||      ||   |    ||| || |  |   | |  ||   ||          | |||| ||  |||  ||||   |  
GCATGGAGTGTGCCAGAAGTGTTGCGGCCACTTTATGAATCATCCAAGGTGGTTGCTCAGAAAATGACAATTGCAgtaagttc----attattgttaagtcaaaaaataaaattgggatttaaagtcaaattttgatggactagtggtgctattgtgaacaatgtgcaaactgaaccac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29626563|gb|CB631574.1|CB631574
EST:     GGCCACTCTACGAGTCATCTAGGGTAGTTGCTCAGAAAATGACTACTGCA                         GCACTACGGCACATCAGACAAATTGCTCAAGAGACAAGCGGGCGAGGTTGT
genomic: GGCCACTCTACGAGTCATCTAGGGTAGTTGCTCAGAAAATGACTACTGCAgtaagttcct ... tactataaagGCACTACGGCACATCAGACAAATTGCTCAAGAGACAAGCGGG-GAGGTTGT
EST: gi|58662456|gb|CK051142.1|CK051142
EST:     GGCCACTCTACGAGTCATCTAGGGTAGTTGCTCAGAAAATGACTACTGCA                         GCACTACGGCACATCAGACAAATTGCTCAAGAGACAAGCGGGGAGGTTGTA
genomic: GGCCACTCTACGAGTCATCTAGGGTAGTTGCTCAGAAAATGACTACTGCAgtaagttcct ... tactataaagGCACTACGGCACATCAGACAAATTGCTCAAGAGACAAGCGGGGAGGTTGTA