1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGGAGTTGACAGTGAAGGACGCCCGGTTATGGTTGTTGTTGGTGCACACTTTCTTCTTCGCTGCTTGGATCTTGAACGGTTTGTTCTACATGTAGTAAAGgtaattgtcctgccctgaagttatgcagcaatatgttacattatgtatataactatatatcttaaaacatttcttgaagtttcagatggcagtagcacac...
species | Oryza sativa |
transcript | LOC_Os10g30750.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTCTTCTTCGCTGCTTGGATCTTGAACGGTTTGTTCTACATGTAGTAAAG GAGTTTGAACCTTTGATTCAGAAGCCATATAGCATTGTCTATTTCCATTCTEST: gi|29672652|gb|CB668927.1|CB668927
genomic: TTCTTCTTCGCTGCTTGGATCTTGAACGGTTTGTTCTACATGTAGTAAAGgtaattgtcc ... ctctttgcagGAGTTTGAACCTTTGATTCAGAAGCCATATAGCATTGTCTATTTCCATTCT
EST: ACATGTAGTAAAG GAGTTTGAACCTTTGATTCAGAAGCCATATAGCATTGTCTATTTCCATTCTEST: gi|58600810|gb|CK011338.1|CK011338
genomic: ACATGTAGTAAAGgtaattgtcc ... ctctttgcagGAGTTTGAACCTTTGATTCAGAAGCCATATAGCATTGTCTATTTCCATTCT
EST: TTCTTCTTCGCTGCTTGGATCTTGAACGGTTTGTTCTACATGTAGTAAAG GAGTTTGAACCTTTGATTCAGAAGCCATATAGCATTGTCTATTTCCATTCTEST: gi|25803039|gb|CA759000.1|CA759000
genomic: TTCTTCTTCGCTGCTTGGATCTTGAACGGTTTGTTCTACATGTAGTAAAGgtaattgtcc ... ctctttgcagGAGTTTGAACCTTTGATTCAGAAGCCATATAGCATTGTCTATTTCCATTCT
EST: CGGTTTGTTCTACATGTAGTAAAG GAGTTTGAACCTTTGATTCAGAAGCCATATAGCATTGTCTATTTCCATTTTEST: gi|86828186|gb|CI276799.1|CI276799
genomic: CGGTTTGTTCTACATGTAGTAAAGgtaattgtcc ... ctctttgcagGAGTTTGAACCTTTGATTCAGAAGCCATATAGCATTGTCTATTTCCATTCT
EST: GTTTGTTCTACATGTAGTAAAG GAGTGTGAACCTTTGATTCAGAAGCCATATAGCATTGTCTATTTCCATTCTEST: gi|33800827|gb|CF326285.1|CF326285
genomic: GTTTGTTCTACATGTAGTAAAGgtaattgtcc ... ctctttgcagGAGTTTGAACCTTTGATTCAGAAGCCATATAGCATTGTCTATTTCCATTCT
EST: TTCTTCTTCGCTGCTTGGATCTTGAACGGTTTGTTCTACATGTAGTAAAG GAGTTTGAACCTTTGATTCAGAAGCCATATAGCATTGTCTATTTCCATTCTEST: gi|218487094|gb|FG954412.1|FG954412
genomic: TTCTTCTTCGCTGCTTGGATCTTGAACGGTTTGTTCTACATGTAGTAAAGgtaattgtcc ... ctctttgcagGAGTTTGAACCTTTGATTCAGAAGCCATATAGCATTGTCTATTTCCATTCT
EST: TTCTTCTTCGCTGCTTGGATCTTGAACGGTTTGTTCTACATGTAGTAAAG GAGTTTGAACCTTTGATTCAGAAGCCATATAGCATTGTCTATTTCCATTCT
genomic: TTCTTCTTCGCTGCTTGGATCTTGAACGGTTTGTTCTACATGTAGTAAAGgtaattgtcc ... ctctttgcagGAGTTTGAACCTTTGATTCAGAAGCCATATAGCATTGTCTATTTCCATTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGTTGACAGTGAAGGACGCCCGGTTATGGTTGTTGTTGGTGCACACTTTCTTCTTCGCTGCTTGGATCTTGAACGGTTTGTTCTACATGTAGTAAAGgtaattgtcctgccctgaagttatgcagcaatatgttacattatgtatataactatatatcttaaaacatttcttgaagtttcagatggcagtagcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgccc