1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCTTGCTATGGGCAAAGTTGATCAATTGCATCCAGATCTGGCCATAGATCCCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTGgtacagtaaaatatattggtctggtgatcccttttatcccatgatcaaagaactcttaccaagggtcttgcttgtttgtag
species | Oryza sativa |
transcript | LOC_Os10g27230.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CCCTTGGAATTTTACGCCCTGCGAGCCAGTTAACCCATCAGCTTCCTCTG GTGAGTGCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTGEST: gi|29613589|gb|CB618602.1|CB618602
genomic: CCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTGgtacagtaaa ... ttgtttgtagGTGAGTGCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTG
EST: CCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTG GTGAGTGCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTGEST: gi|29627416|gb|CB632427.1|CB632427
genomic: CCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTGgtacagtaaa ... ttgtttgtagGTGAGTGCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTG
EST: CCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTG GTGAGTGCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTGEST: gi|42592200|gb|CK738686.1|CK738686
genomic: CCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTGgtacagtaaa ... ttgtttgtagGTGAGTGCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTG
EST: CCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTG GTGAGTGCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTGEST: gi|29676248|gb|CB672523.1|CB672523
genomic: CCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTGgtacagtaaa ... ttgtttgtagGTGAGTGCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTG
EST: CCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTG GTGAGTGCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTGEST: gi|29630215|gb|CB635224.1|CB635224
genomic: CCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTGgtacagtaaa ... ttgtttgtagGTGAGTGCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTG
EST: CCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTG GTGAGTGCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTGEST: gi|29623249|gb|CB628260.1|CB628260
genomic: CCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTGgtacagtaaa ... ttgtttgtagGTGAGTGCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTG
EST: CCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTG GTGAGTGCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTG
genomic: CCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTGgtacagtaaa ... ttgtttgtagGTGAGTGCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTGCTATGGGCAAAGTTGATCAATTGCATCCAGATCTGGCCATAGATCCCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTGgtacagtaaaatatattggtctggtgatcccttttatcccatgatcaaagaactcttaccaagggtcttgcttgtttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT