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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAAGGACTGGAAAAAGGCATTGCAGCTATTTGAGGAGATCAAGTCAATCAAATTAATGCCAACCGTTTCAATGATGAATGCTCTGATCACCGCATTGTgtatgtccaaacatctgaatacttgtagcaataataaaatgttttttttgtcatttcagtgagctaatactaacgttttgccaattaataaagatgtgtg...

Basic information

species Oryza sativa
transcript LOC_Os10g10170.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g10170.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G018929_T02 (Zea mays), 5'ss of exon 4
GCCAAGGACTGGAAAAAGGCATTGCAGCTATTTGAGGAGATCAAGTCAATCAAATTAATGCCAACCGTTTCAATGATGAATGCTCTGATCACCGCATTGTgtatgtccaaacatctgaatacttgtagcaa-taataaaatgttttttttgtcatttcagtgagctaatac-----taacgttttgccaattaataaagatgtgtg
||  | |||||||| |||||| |||||||||  |||||||||||||| |||||||| |  ||| | |||||||||||||||||| |||||||| |  |||||||||| |     ||||| |    ||  || |  |   || |     ||     | |  | ||  | ||      ||||||| |     |||       | ||| 
GCGGACGACTGGAAGAAGGCACTGCAGCTATACGAGGAGATCAAGTCTATCAAATTGACCCCATCGGTTTCAATGATGAATGCTTTGATCACCTCTCTGTgtatgtcta-----ctgaaaaaagataaaaaatgttttcatttgccacttacatatactataagagagtatgtctttaacgttgtcattgttacatctagtttgt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58691402|gb|CK080089.1|CK080089
EST:     CAAATTAATGCCAACCGTTTCAATGATGAATGCTCTGATCACCGCATTGT                         GTGATGGTGATCAAGTTTTGAAGTCTTTTGAGGTCCTTAGTGAGATGAAGA
genomic: CAAATTAATGCCAACCGTTTCAATGATGAATGCTCTGATCACCGCATTGTgtatgtccaa ... gatgatgcagGTGATGGTGATCAAGTTTTGAAGTCTTTTGAGGTCCTTAGTGAGATGAAGA
EST: gi|58695106|gb|CK083793.1|CK083793
EST:     CAAATTAATGCCAACCGTTTCAATGATGAATGCTCTGATCACCGCATTGT                         GTGATGGTGATCAAGTTTTGAAGTCTTTTGAGGTCCTTAGTGAGATGAAGA
genomic: CAAATTAATGCCAACCGTTTCAATGATGAATGCTCTGATCACCGCATTGTgtatgtccaa ... gatgatgcagGTGATGGTGATCAAGTTTTGAAGTCTTTTGAGGTCCTTAGTGAGATGAAGA