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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTACCACTTTGCAAAGGACACCATGAACCTTGCATTCCAAGGTCTGTGAAGAAAGGCTCTAATATTGGTCGCCTATTCTATGTCTGTGCCCGTGCTCAGgtatttaacttcagaatcaactgctcaattcacatccgaggaacaatcataaaggtagttcatattgacagaggatgaaaagcattggcattgtgctgtaaccaccatgtattgtctatgacag

Basic information

species Oryza sativa
transcript LOC_Os09g36530.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g36530.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G103458_T01 (Zea mays), 5'ss of exon 9
CCTACCACTTTGCAAAGGACACCATGAACCTTGCATTCCAAGGTCTGTGAAGAAAGGCTCTAATATTGGTCGCCTATTCTATGTCTGTGCCCGTGCTCAGgtatttaact--tcagaatcaactgctcaattcacatccgaggaaca-atcataaaggtagttcatattgacagaggatgaaaagcattggcattgtgctgtaaccaccatgtattgtctatgacag
 ||||||| ||||||||| ||   |||||| |||||||| |||||||||||||| ||| ||||||| || ||  | |||||||||||||| ||||||||||||      |  | | |||  |||||| | |  ||||   |  | ||   |||  |||  |   ||  |  ||  |     |   | ||   |    | | || |||                    
ACTACCACGTTGCAAAGGGCATAGTGAACCATGCATTCCGAGGTCTGTGAAGAAGGGCCCTAATATAGGCCGTTTGTTCTATGTCTGTGCTCGTGCTCAGgtacacgtgtacttacaatttactgcttagtagacataacatcatcatgccattcagg-ggcgaatcctaccatggcgcaca---ccttaaga----gatatacccat-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88271762|gb|CI387815.1|CI387815
EST:     TTCTATGTCTGTGCCCGTGCTCAG                         GGACCTGCATCAAACCAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCACT
genomic: TTCTATGTCTGTGCCCGTGCTCAGgtatttaact ... tctatgacagGGACCTGCATCAAACCAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCACT
EST: gi|86437027|gb|CI118749.1|CI118749
EST:     AGAAAGGCTCTAATATTGGTCGCCTATTCTATGTCTGTGCCCGTGCTCAG                         GGACCTGCATCAAACCAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCACT
genomic: AGAAAGGCTCTAATATTGGTCGCCTATTCTATGTCTGTGCCCGTGCTCAGgtatttaact ... tctatgacagGGACCTGCATCAAACCAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCACT
EST: gi|88969421|gb|CI382959.1|CI382959
EST:     TTCTATTTCTGTGCCCGTGCTCAG                         GGACCTGCATCAAACCAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCACT
genomic: TTCTATGTCTGTGCCCGTGCTCAGgtatttaact ... tctatgacagGGACCTGCATCAAACCAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCACT
EST: gi|88261828|gb|CI365404.1|CI365404
EST:     AGAAA-GCTCTAATATTGGTCGCCTATTCTATGTCTGTGCCCGTGCTCA-                         GGACCTGCATCAAACCAAGAACCAAATTGTGGTCACTTTCAGTGGGCCACT
genomic: AGAAAGGCTCTAATATTGGTCGCCTATTCTATGTCTGTGCCCGTGCTCAGgtatttaact ... tctatgacagGGACCTGCATCAAACCAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCACT