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TGCAATAATTGAGTACATTCCTTTATTGGCTAGTCAATTAGGCGTTGGATTTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAGgtatttaccaggctgtcattctaagtctctcgatcatctatatattgtgcacaaaggcactctaatattatcaacatacgtgagtgtagcaactgttttt...
species | Oryza sativa |
transcript | LOC_Os09g07510.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAG GTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAGEST: gi|58683974|gb|CK072661.1|CK072661
genomic: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAGgtatttacca ... ttaattttagGTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAG
EST: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAG GTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAGEST: gi|29641703|gb|CB646710.1|CB646710
genomic: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAGgtatttacca ... ttaattttagGTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAG
EST: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAG GTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAGEST: gi|38476835|gb|CF960968.1|CF960968
genomic: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAGgtatttacca ... ttaattttagGTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAG
EST: CGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAG GTCTTCTCAGTCGAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAEST: gi|87017349|gb|CI301385.1|CI301385
genomic: CGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAGgtatttacca ... ttaattttagGTCTTCTCAATC-AGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGA
EST: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAG GTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAGEST: gi|29642127|gb|CB647134.1|CB647134
genomic: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAGgtatttacca ... ttaattttagGTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAG
EST: GCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAG GTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAGEST: gi|87038212|gb|CI192834.1|CI192834
genomic: GCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAGgtatttacca ... ttaattttagGTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAG
EST: ATGCAATGGTTGGAAGATAAG GTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAGEST: gi|87036423|gb|CI191045.1|CI191045
genomic: ATGCAATGGTTGGAAGATAAGgtatttacca ... ttaattttagGTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAG
EST: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAG GTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAGEST: gi|29667131|gb|CB663406.1|CB663406
genomic: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAGgtatttacca ... ttaattttagGTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAG
EST: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAG GTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAGEST: gi|58685311|gb|CK073998.1|CK073998
genomic: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAGgtatttacca ... ttaattttagGTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAG
EST: TGGAAGATAAG TTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAGEST: gi|218487576|gb|FG960599.1|FG960599
genomic: TGGAAGATAAGgtatttacca ... ttaattttagGTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAG
EST: TTATCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGACGATAAG GTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGEST: gi|86899096|gb|CI296244.1|CI296244
genomic: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAGgtatttacca ... ttaattttagGTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTG
EST: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAG GTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAGEST: gi|33656227|gb|CF278841.1|CF278841
genomic: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAGgtatttacca ... ttaattttagGTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAG
EST: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAG GTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAGEST: gi|29621782|gb|CB626793.1|CB626793
genomic: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAGgtatttacca ... ttaattttagGTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAG
EST: TGGTTGGAAGATAAG GTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAGEST: gi|58678838|gb|CK067525.1|CK067525
genomic: TGGTTGGAAGATAAGgtatttacca ... ttaattttagGTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAG
EST: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAG GTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAG
genomic: TTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAGgtatttacca ... ttaattttagGTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAATAATTGAGTACATTCCTTTATTGGCTAGTCAATTAGGCGTTGGATTTTTCGATGACAAGCTGGGGGCACTTTGCATGCAATGGTTGGAAGATAAGgtatttaccaggctgtcattctaagtctctcgatcatctatatattgtgcacaaaggcactctaatattatcaacatacgtgagtgtagcaactgttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA