1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAGgtagtttccttttgcaaaatatactgtacagtatagatatgcaactagacatctatttttaacaacatgccatcactgttttcttattactatatatcaatatcttttatcag
species | Oryza sativa |
transcript | LOC_Os08g42410.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAGATACTTTCCAAGGAGGGAATCAGTGCTGACG GGGATCAATCTTCGGTCAATTAGGCGATTGGATAGAGCTACTATCAATGCEST: gi|33824375|gb|CF338004.1|CF338004
genomic: GAGATACTTTCCAAGGAGGGAATCAGTGCTGA-Ggtagtttcct ... cttttatcagGTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGC
EST: GCTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAG GTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCAEST: gi|218478794|gb|FG960305.1|FG960305
genomic: GCTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAGgtagtttcct ... cttttatcagGTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCA
EST: TGCAGAGATACTTTTCCAAGGAGGGAATCAGTGCTGAG GTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCAEST: gi|87020958|gb|CI269675.1|CI269675
genomic: TGCAGAGATAC-TTTCCAAGGAGGGAATCAGTGCTGAGgtagtttcct ... cttttatcagGTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCA
EST: GCTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAG GTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCAEST: gi|38472326|gb|CF956457.1|CF956457
genomic: GCTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAGgtagtttcct ... cttttatcagGTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCA
EST: GCTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAG GTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCAEST: gi|33824376|gb|CF338005.1|CF338005
genomic: GCTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAGgtagtttcct ... cttttatcagGTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCA
EST: GCTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAG GTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCAEST: gi|29614435|gb|CB619448.1|CB619448
genomic: GCTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAGgtagtttcct ... cttttatcagGTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCA
EST: GCTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAG GTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCAEST: gi|38475005|gb|CF959138.1|CF959138
genomic: GCTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAGgtagtttcct ... cttttatcagGTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCA
EST: GCTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAG GTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCAEST: gi|86854408|gb|CI256530.1|CI256530
genomic: GCTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAGgtagtttcct ... cttttatcagGTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCA
EST: CAGGCTGCAGAGATACTTTCCAAGGAGGGAATCAGTCCTGAG CTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCAEST: gi|86495018|gb|CI137651.1|CI137651
genomic: CAGGCTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAGgtagtttcct ... cttttatcagGTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCA
EST: CTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAG GTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCA
genomic: CTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAGgtagtttcct ... cttttatcagGTGATCAATCTTCGGTCAATTAGGCCATTGGATAGAGCTACTATCAATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCAGAGATACTTTCCAAGGAGGGAATCAGTGCTGAGgtagtttccttttgcaaaatatactgtacagtatagatatgcaactagacatctatttttaacaacatgccatcactgttttcttattactatatatcaatatcttttatcag
CTGCAG
- - - - - - - - - AAGGAG