1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTATGTTGTTTCAGGGATAAAAATATAATAGGCAACGCGATCACTCCCTTCATGCTTGACAGAGTGAAAGTACTAACTGGACGATCTTCGCTAGAAGCCAgtatcctacaaatttaatttcaaactttgctgtattttgaaccacgatgattttcgtatttccctgtagttttgagcattgattagctatttatttctat...
species | Oryza sativa |
transcript | LOC_Os08g39420.1 |
intron # | 9 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: CTTGACAGAGTGAAAGTACTAACTGGACGATCTTCGCTAGAAGCCA ATATTGCGCTTGTAAAGAACAATGCTCTTGTTGGTGCTAAAATTGCTGTGGEST: gi|88224122|gb|CI223971.1|CI223971
genomic: CTTGACAGAGTGAAAGTACTAACTGGACGATCTTCGCTAGAAGCCAgtatcctaca ... gcatattcagATATTGCGCTTGTAAAGAACAATGCTCTTGTTGGTGCTAAAATTGCTGTGG
EST: CATGCTTGACAGAGTGAAAGTACTAACTGGACGATCTTCGCTAGAAGCCA ATATTGCGCTTGTAAAGAACAATGCTCTTGTTGGTGCTAAAATTGCTGTGGEST: gi|88835296|gb|CI370599.1|CI370599
genomic: CATGCTTGACAGAGTGAAAGTACTAACTGGACGATCTTCGCTAGAAGCCAgtatcctaca ... gcatattcagATATTGCGCTTGTAAAGAACAATGCTCTTGTTGGTGCTAAAATTGCTGTGG
EST: CATGCTTGACAGAGTGAAAGTACTAACTGGACGATCTTCGCTAGAAGCCA ATATTGCGCTTGTAAAGAACAATGCTCTTGTTGGTGCTAAAATTGCTGTGGEST: gi|86853962|gb|CI329408.1|CI329408
genomic: CATGCTTGACAGAGTGAAAGTACTAACTGGACGATCTTCGCTAGAAGCCAgtatcctaca ... gcatattcagATATTGCGCTTGTAAAGAACAATGCTCTTGTTGGTGCTAAAATTGCTGTGG
EST: CATGCTTGACAGAGTGAAAGTACTAACTGGACGATCTTCGCTAGAAGCCA ATATTGCGCTTGTAAAGAACAATGCTCTTTTTGGTGCTAAAATTGCTGTGGEST: gi|15858529|gb|BI811341.1|BI811341
genomic: CATGCTTGACAGAGTGAAAGTACTAACTGGACGATCTTCGCTAGAAGCCAgtatcctaca ... gcatattcagATATTGCGCTTGTAAAGAACAATGCTCTTGTTGGTGCTAAAATTGCTGTGG
EST: CATGCTTGACAGAGTGAAAGTACTAACTGGACGATCTTCGCTAGAAGCCA ATATTGCGCTTGTAAAGAACAATGCTCTTGTTGGTGCTAAAATTGCTGTGGEST: gi|86879940|gb|CI340002.1|CI340002
genomic: CATGCTTGACAGAGTGAAAGTACTAACTGGACGATCTTCGCTAGAAGCCAgtatcctaca ... gcatattcagATATTGCGCTTGTAAAGAACAATGCTCTTGTTGGTGCTAAAATTGCTGTGG
EST: CATGCTTGACAGAGTGAAAGTACTAACTGGACGATCTTCGCTAGAAGCC- A-ATTGCGCTTGTAAAGAACAATGCTCTTGTTGGTGCTAAAATTGCTGTGGEST: gi|89174503|gb|CI110701.1|CI110701
genomic: CATGCTTGACAGAGTGAAAGTACTAACTGGACGATCTTCGCTAGAAGCCAgtatcctaca ... gcatattcagATATTGCGCTTGTAAAGAACAATGCTCTTGTTGGTGCTAAAATTGCTGTGG
EST: CATGCTTGACAGAGTGAAAGTACTAACTGGACGATCTTCGCTAGAAGCCA ATATTGCGCTTGTAAAGAACAATGCTCTTGTTGGTGCTAAAATTGCTGTGGEST: gi|88846107|gb|CI372875.1|CI372875
genomic: CATGCTTGACAGAGTGAAAGTACTAACTGGACGATCTTCGCTAGAAGCCAgtatcctaca ... gcatattcagATATTGCGCTTGTAAAGAACAATGCTCTTGTTGGTGCTAAAATTGCTGTGG
EST: TAACTGGACGATCTTCGCTAGAAGCCA ATATTGCGCTTGTAAAGAACAATGCTCATTGTTGGTGCTAAAATTGCTGTG
genomic: TAACTGGACGATCTTCGCTAGAAGCCAgtatcctaca ... gcatattcagATATTGCGCTTGTAAAGAACAATGCTC-TTGTTGGTGCTAAAATTGCTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATGTTGTTTCAGGGATAAAAATATAATAGGCAACGCGATCACTCCCTTCATGCTTGACAGAGTGAAAGTACTAACTGGACGATCTTCGCTAGAAGCCAgtatcctacaaatttaatttcaaactttgctgtattttgaaccacgatgattttcgtatttccctgtagttttgagcattgattagctatttatttctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC