Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttattatcgtgttgtggtgttattaagattcatcgatgcacctttttttttttttgcggggaagattcatcagtgcattctgtctgacaaggac...

Basic information

species Oryza sativa
transcript LOC_Os08g26870.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g26870.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G053531_T02 (Zea mays), 5'ss of exon 9
ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttattatcgtgttgtggtgttat-taagattcatcgatgcacctttttttttttttgcggggaagattcatcagtgcattctgtctgacaaggac
||||||||| ||||||||||| |||||||||||||||||| || |  |||||||||||||||||||| | |||||||||||||| ||||||||||||  ||      |  | |  |      | || ||  ||  | |  || |  || |  |  |     |  |  || |    | | |       | | | 
ACCTGATGGACAGCCATGTGTGGAGGCTCAAGAGTTTGGACTGGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTGgtaatgatacatctctactatattagagcatcagttttttcagttccactatcgttgtgctccccccacatttaaataataaaaatgttaaaattatgca-

upper sequence: LOC_Os08g26870.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G006468_T03 (Zea mays), 5'ss of exon 9
ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttattatcgtgttgtggtgttattaagattcatcgatgcacctttttttttttttgcggggaagattcatcagtgcattctgtctgacaaggac----
||| ||||| ||| ||| ||| ||||||||||||||||||||| |   |||||||||||||||||| || |||||||||||||| ||||||||||||  |    || | ||||||  | ||| | ||||||| | | ||      ||     |  ||  | || ||  ||     |  ||| | || |  ||    
ACCCGATGGACAGGCATCTGTTGAGGCTCAAGAGTTTGGATTGGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatccattcttcttgtggattcattca-attcatcta-ggactccagattgagcatctggcaatgactc--cacccagtgttgtattaccaaaaccgtc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30228242|gb|CB966133.1|CB966133
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88537216|gb|CI465038.1|CI465038
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86826588|gb|CI364159.1|CI364159
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAA-CTGATGCTGCTGAGGTCTAAGCGGAAAAACTGG
EST: gi|86839245|gb|CI331510.1|CI331510
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86428772|gb|CI075453.1|CI075453
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88833575|gb|CI077056.1|CI077056
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAA-TGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88458762|gb|CI558423.1|CI558423
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|89163031|gb|CI099921.1|CI099921
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86841671|gb|CI337368.1|CI337368
EST:     GATCCGGAACATGCTCATTGCACCTTTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86870797|gb|CI323841.1|CI323841
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|27920662|gb|CB096470.1|CB096470
EST:     GATCCGGAGCATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATTCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86541133|gb|CI181339.1|CI181339
EST:     GATCCGGAACATGCTCATTGCATCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86866657|gb|CI343508.1|CI343508
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|89182212|gb|CI113581.1|CI113581
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|58610870|gb|CK038582.1|CK038582
EST:     GATCCGGTACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGACGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86600740|gb|CI356497.1|CI356497
EST:     ATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAAGATGCTG                         CAACGTGGAGGGACAAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGG
genomic: ATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATAC-AAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGAC-AAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGG
EST: gi|58692321|gb|CK081008.1|CK081008
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATTCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88219539|gb|CI219099.1|CI219099
EST:     GATCCGGAACATGCTCATTACAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86845296|gb|CI340393.1|CI340393
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGGCGGAAAAACTGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAG-CGGAAAAACTGG
EST: gi|86873846|gb|CI334378.1|CI334378
EST:     GATCCGGAACATGCTCATTGCAGCTTTTGAAGAGAGATACAAAGATGCTC                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88220033|gb|CI219593.1|CI219593
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86545503|gb|CI185709.1|CI185709
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86486764|gb|CI129397.1|CI129397
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88843827|gb|CI011085.1|CI011085
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86424485|gb|CI063246.1|CI063246
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86836286|gb|CI348240.1|CI348240
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88258758|gb|CI361344.1|CI361344
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86881486|gb|CI322571.1|CI322571
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGGCTGCTGAGGTCTAAGCGGAAAAACTGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGAT-GCTGCTGAGGTCTAAGCGGAAAAACTGG
EST: gi|29667115|gb|CB663390.1|CB663390
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|89194098|gb|CI116535.1|CI116535
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86535591|gb|CI175797.1|CI175797
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|13806781|gb|AU181664.1|AU181664
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88221407|gb|CI221363.1|CI221363
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86840712|gb|CI333955.1|CI333955
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88521611|gb|CI449315.1|CI449315
EST:     GATCCGGAACATGCTCATTGCANCTGTTNAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|58591729|gb|CF990037.1|CF990037
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATTCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|33656426|gb|CF279040.1|CF279040
EST:     GATCCGGAACATGCTCACTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88525176|gb|CI454158.1|CI454158
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|89165034|gb|CI102122.1|CI102122
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88844616|gb|CI021191.1|CI021191
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88852227|gb|CI373995.1|CI373995
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86835533|gb|CI347990.1|CI347990
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|58613072|gb|CK040784.1|CK040784
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAAGGTGGAGGGACAAACTGATTCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86535529|gb|CI175735.1|CI175735
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|30228832|gb|CB966723.1|CB966723
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86853630|gb|CI330481.1|CI330481
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|89182723|gb|CI114092.1|CI114092
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|23514436|gb|BU673639.1|BU673639
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|89175204|gb|CI111723.1|CI111723
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86522948|gb|CI163154.1|CI163154
EST:     ATCCGGAACATGCTCATTGCAGCTGTTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: ATCCGGAACATGCTCATTGCAGCTGTT-GAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88257497|gb|CI359885.1|CI359885
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88217099|gb|CI216948.1|CI216948
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGCGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88442051|gb|CI560292.1|CI560292
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86870982|gb|CI326801.1|CI326801
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|163923065|gb|EG712786.1|EG712786
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86841645|gb|CI337352.1|CI337352
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86884643|gb|CI313022.1|CI313022
EST:     GATCCGGAACATGCTAATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86418718|gb|CI053519.1|CI053519
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88833609|gb|CI077090.1|CI077090
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88256230|gb|CI358618.1|CI358618
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAGACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|58030519|gb|CX728062.1|CX728062
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGC
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88429758|gb|CI559983.1|CI559983
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86433857|gb|CI094200.1|CI094200
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|89161725|gb|CI100885.1|CI100885
EST:     TCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATTACAAAGATTNCTG                         CA-CGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGG
genomic: TCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGAT-ACAAAGATG-CTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGG
EST: gi|86864365|gb|CI334112.1|CI334112
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|12405243|gb|AU166844.1|AU166844
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88274075|gb|CI394481.1|CI394481
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|86867122|gb|CI343891.1|CI343891
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|15855809|gb|BI808621.1|BI808621
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATTCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88437955|gb|CI536114.1|CI536114
EST:     GATCCGGAACATGCTCATTGCACCTTTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
EST: gi|88250941|gb|CI349023.1|CI349023
EST:     GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG                         CAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG
genomic: GATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttat ... gtttttacagCAACGTGGAGGGACAAACTGATGCTGCTGAGGTCTAAGCGGAAAAACTGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTGgtaattttattatcgtgttgtggtgttattaagattcatcgatgcacctttttttttttttgcggggaagattcatcagtgcattctgtctgacaaggac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG