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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAGgtaagggattactcataatttgtaatcatgttgctttagtgtgtgtttctatagggtgatttatcttagcacttgtttcttagttgctttaattgagtac...

Basic information

species Oryza sativa
transcript LOC_Os08g08200.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g08200.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G042398_T02 (Zea mays), 5'ss of exon 8
-------------------------------------------------AAATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAGgtaagggattactcataatttgtaatcatgttgctttagtgtgtgtttctatagggtgatttatcttagcacttgtttct--tagttgctttaatt-gagtac-
                                                 |||||||| ||||||||||| || |||||||| ||||||||||||||||||||||| |   |||  |  || || |  || |  |||  || | |   | || ||| |  || |||||  ||||  ||| |  ||||   ||  |||  | ||  
TTTTCTGGTATAGTAACTGTTCCATTTGTTTCTTTTGATAATGGTGTAGAAATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAGgtaagtggg-acttgtttttcgttaatatatgcctt--gtat-ttcgtttaaaggatcgttgatcttgtcactaatttttaatagtcttttggatttaaatatc

upper sequence: LOC_Os08g08200.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G042398_T01 (Zea mays), 5'ss of exon 10
AAATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAGgtaagggattactcataatttgtaatcatgttgctttagtgtgtgtttctatagggtgatttatcttagcacttgtttct--tagttgctttaatt-gagtac-
|||||||| ||||||||||| || |||||||| ||||||||||||||||||||||| |   |||  |  || || |  || |  |||  || | |   | || ||| |  || |||||  ||||  ||| |  ||||   ||  |||  | ||  
AAATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAGgtaagtggg-acttgtttttcgttaatatatgcctt--gtat-ttcgtttaaaggatcgttgatcttgtcactaatttttaatagtcttttggatttaaatatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58693212|gb|CK081899.1|CK081899
EST:     AATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAG                         GATGCTGTTGATTGCCCGGAATGGGTTGTTCCATTCCATCTCTTCAAATTG
genomic: AATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAGgtaagggatt ... caatatgcagGATGCTGTTGATTGCCCGGAATGGGTTGTTCCATTCCATCTCTTCAAATTG
EST: gi|66916049|gb|CX102897.1|CX102897
EST:     AATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAG                         GATGCTGTTGATTGCCCGGAATGGGTTGTTCCATTCCATCTCTTCAAATTG
genomic: AATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAGgtaagggatt ... caatatgcagGATGCTGTTGATTGCCCGGAATGGGTTGTTCCATTCCATCTCTTCAAATTG