1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGTGTATGCTCATCCTTCAAATTCAGGACCAGGATGATGTTGAAATTAGGCTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAGgtatgccttaatcctagtcctaacatattcccaaacgctggcttatgcatatggcaagattttacaccctccagtcataaatatttgacatttaggacaa...
species | Oryza sativa |
transcript | LOC_Os08g08000.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTGTTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAG GTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAAEST: gi|163928939|gb|EG709767.1|EG709767
genomic: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAGgtatgcctta ... cctttgctagGTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAA
EST: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAG GTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAAEST: gi|58679868|gb|CK068555.1|CK068555
genomic: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAGgtatgcctta ... cctttgctagGTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAA
EST: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAG GTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAAEST: gi|42592165|gb|CK738651.1|CK738651
genomic: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAGgtatgcctta ... cctttgctagGTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAA
EST: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAG GTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAAEST: gi|29682148|gb|CB678423.1|CB678423
genomic: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAGgtatgcctta ... cctttgctagGTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAA
EST: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAG GTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAAEST: gi|58663093|gb|CK051779.1|CK051779
genomic: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAGgtatgcctta ... cctttgctagGTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAA
EST: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAG GTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAAEST: gi|88320911|gb|CI528063.1|CI528063
genomic: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAGgtatgcctta ... cctttgctagGTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAA
EST: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAG GTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAAEST: gi|58591046|gb|CF989354.1|CF989354
genomic: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAGgtatgcctta ... cctttgctagGTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAA
EST: CTGGTAGCTTTTGCAGAAAATTCTTAACCCTTTGTAAAGTTACTGTACAG GTGTTCGTGCTGTGGAAGEST: gi|29644349|gb|CB649356.1|CB649356
genomic: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAGgtatgcctta ... cctttgctagGTGTTCGTGCTGTGGAAG
EST: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAG GTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAAEST: gi|88994546|gb|CI117698.1|CI117698
genomic: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAGgtatgcctta ... cctttgctagGTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAA
EST: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAG GTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAA
genomic: CTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAGgtatgcctta ... cctttgctagGTGTTCGTGCTGTGGAAGCGGCGCGGGTAGCGGTTTCTTCATTTCCCCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGTATGCTCATCCTTCAAATTCAGGACCAGGATGATGTTGAAATTAGGCTGGTAGCTTTTGCAGAAAATTCTTACCCCTTTGTAAAGTTACTGTACAGgtatgccttaatcctagtcctaacatattcccaaacgctggcttatgcatatggcaagattttacaccctccagtcataaatatttgacatttaggacaa
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