1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATGAGCAGTTCTCAAGATTTAGGGTGACTGCACTAACACTTTCGGAATTGTCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCCTTTATGACACTAGgtaaagcacttataatgttttccttttacatcattaatttatgtgtccattttttctaaccttttgtttgtatttgacttttcactgcag
species | Oryza sativa |
transcript | LOC_Os08g01180.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCCTTTATGACACTAG AGAATCAGCAGATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAEST: gi|3760363|gb|C97617.1|C97617
genomic: TCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCCTTTATGACACTAGgtaaagcact ... ttcactgcagAGAATCAGCAGATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGA
EST: CCGGTGGCCTTTTTGGCCACTAGG AGAATCNGCAGATGCTGATTCAGTAATTAGAACTGTCAGATTAGTTTTCTEST: gi|218494749|gb|FG957718.1|FG957718
genomic: CCGGTGGCCTTTAT-GACACTA-Ggtaaagcact ... ttcactgcagAGAATCAGCAGATGCTGAGTCAGTAATTAGAACTGTCAGATTAG-TTTCT
EST: TCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCCTTTATGACACTAG AGAATCAGCAGATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAEST: gi|38476686|gb|CF960819.1|CF960819
genomic: TCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCCTTTATGACACTAGgtaaagcact ... ttcactgcagAGAATCAGCAGATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGA
EST: TCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCCTTTATGACACTAG AGAATCAGCAGATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAEST: gi|88262193|gb|CI365769.1|CI365769
genomic: TCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCCTTTATGACACTAGgtaaagcact ... ttcactgcagAGAATCAGCAGATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGA
EST: TCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCCTTTATGACACTAG AGAATCAGCAGATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAEST: gi|29613550|gb|CB618563.1|CB618563
genomic: TCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCCTTTATGACACTAGgtaaagcact ... ttcactgcagAGAATCAGCAGATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGA
EST: TAGAAAGCACCGGGGGCCTTTATGACACTAG AGAATCAGCAGATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAEST: gi|58606681|gb|CK034714.1|CK034714
genomic: TAGAAAGCACCGGTGGCCTTTATGACACTAGgtaaagcact ... ttcactgcagAGAATCAGCAGATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGA
EST: TCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCCTTTATGACACTAG AGAATCAGCAGATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAEST: gi|86887659|gb|CI311942.1|CI311942
genomic: TCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCCTTTATGACACTAGgtaaagcact ... ttcactgcagAGAATCAGCAGATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGA
EST: TGACTTTTTAAAAAAGCCCCGGTGGCCTTTATGACACTAAG AGAATCAGCAGATGCTGAGTCAGTAATTAAGAACTGTCAGATTAGTTTTT
genomic: TGACTTTTT-AGAAAGCACCGGTGGCCTTTATGACACT-AGgtaaagcact ... ttcactgcagAGAATCAGCAGATGCTGAGTCAGTAATT-AGAACTGTCAGATTAGTTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGAGCAGTTCTCAAGATTTAGGGTGACTGCACTAACACTTTCGGAATTGTCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCCTTTATGACACTAGgtaaagcacttataatgttttccttttacatcattaatttatgtgtccattttttctaaccttttgtttgtatttgacttttcactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC