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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGTTTGAAAAGGTCAAGATCGACTGGGGATGGTGCAAACGCAATCCAAGAGGAACAACGGAATGTTTTGAGACGATCAGATCTCTCGGCATTTACGAGgtgcaaaacataatatcagtgtcgctagtgagttaggaaaccattgttaagttgcatactaactgttacttttgttgcaag

Basic information

species Oryza sativa
transcript LOC_Os07g49460.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g49460.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G005732_T03 (Zea mays), 5'ss of exon 3
TAAGTTTGAAAAGGTCAAGATCGACTGGGGATGGTGCAAACG---CAATCCAAGAGGA---ACAACGGAATGTT---TTGAGACGATCAGATCTCTCGGCATTTACGAGgtgcaaaacataatatcagtgtcgctagtgagttaggaaaccattgttaagttgcatactaactgttac---ttttgttgcaag
         | ||||| |||||   ||| |||||||| ||||   || || | || ||   ||| ||||||  |   || || |||||  |||||||||| ||||| |||||||||||||||||||||||||  |||||||||| |||| ||    || ||||  ||||||| |||||   |||| |||||||
---------AGAGGTCGAGATCATGTGGAGATGGTGCCAACGATACAGTCAATGACGATGAACAGCGGAATAGTGCATTAAGGCGATCGAATCTCTCGGCTTTTACAAGgtgcaaaacataatatcagtgtcattagtgagttatgaaagcaacagtatgttgggtactaacagttaccacttttattgcaag

upper sequence: LOC_Os07g49460.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G005732_T02 (Zea mays), 5'ss of exon 8
TAAGTTTGAAAAGGTCAAGATCGACTGGGGATGGTGCAAACGCAATCCAAGAGGAACAACGGAATGTTTTGAGACGATCAGATCTCTCGGCATTTACGAGgtgcaaaacataatatcagtgtcgctagtgagttaggaaaccattgttaagttgcatactaactgttac---ttttgttgcaag
                   || |  ||   | | | ||  |     | | ||  | |     | ||  || || |||||  |||||||||| ||||| |||||||||||||||||||||||||  |||||||||| |||| ||    || ||||  ||||||| |||||   |||| |||||||
-------------------ATGG--TGCCAACGATACAGTCAATGACGATGAACAGCGGAATAGTGCATTAAGGCGATCGAATCTCTCGGCTTTTACAAGgtgcaaaacataatatcagtgtcattagtgagttatgaaagcaacagtatgttgggtactaacagttaccacttttattgcaag

upper sequence: LOC_Os07g49460.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G033962_T01 (Zea mays), 5'ss of exon 6
TAAGTTTGAAAAGGTCAAGATCGACTGGGGATGGTGCAAACGCAATCCAAGAGGA---ACAACGGAAT---GTTTTGAGACGATCAGATCTCTCGGCATTTACGAGgtgcaaaacataatatcagtgtcgctagtgagttaggaaaccattgttaagttgcatactaactgttac---ttttgttgcaag
       ||  | ||  |||| |  ||   |      |||  || || |||| ||   ||||||||||   || || ||||||||| |||| ||||| ||||| |||||||||||||||||||||||||  |||||||||| || | ||    || ||| | ||||||| |||||   |||| |||||||
----CGAGATCATGTGGAGATGG--TGCCAACAACAAAAATACAGTCAAAGACGACGAACAACGGAATTGTGTATTAAGACGATCAAATCTGTCGGCTTTTACAAGgtgcaaaacataatatcagtgtcattagtgagttatgagagcaacagtatgttacgtactaacagttaccacttttattgcaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86894627|gb|CI308315.1|CI308315
EST:     GAGGAACAACGGAATGTTTTGAGACGATCAGATCTCTCGGCATTTACGAG                         GTACCATACACCTG
genomic: GAGGAACAACGGAATGTTTTGAGACGATCAGATCTCTCGGCATTTACGAGgtgcaaaaca ... ttgttgcaagGTACCATACACCTG