1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAGgtatgttttaattgcttttgcaaatgtacccatgttgtttaccttaggtgacatcacttgttgagataaaaactgatcctatatcctccgtatgtgcaag...
species | Oryza sativa |
transcript | LOC_Os07g44350.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CATTCCTATTTCTGATAGTCTGTGGTGTGA-TGCAATCATTGTTGTTAAG ATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCAEST: gi|88979418|gb|CI025920.1|CI025920
genomic: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAGgtatgtttta ... gttcttccagATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCA
EST: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAG ATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCAEST: gi|88375065|gb|CI523330.1|CI523330
genomic: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAGgtatgtttta ... gttcttccagATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCA
EST: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAG ATTGTCAACCCTCACNACAAGAACATCAGAGACATCCCAGGACTGGCACCAEST: gi|86525703|gb|CI165909.1|CI165909
genomic: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAGgtatgtttta ... gttcttccagATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCA
EST: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAG ATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCAEST: gi|86861383|gb|CI328124.1|CI328124
genomic: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAGgtatgtttta ... gttcttccagATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCA
EST: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAG ATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCAEST: gi|88265756|gb|CI376658.1|CI376658
genomic: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAGgtatgtttta ... gttcttccagATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCA
EST: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAG ATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCAEST: gi|3761988|gb|C99236.1|C99236
genomic: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAGgtatgtttta ... gttcttccagATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCA
EST: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAG ATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCAEST: gi|87021361|gb|CI295420.1|CI295420
genomic: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAGgtatgtttta ... gttcttccagATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCA
EST: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAG ATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCAEST: gi|88981829|gb|CI027407.1|CI027407
genomic: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAGgtatgtttta ... gttcttccagATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCA
EST: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAG ATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCAEST: gi|163917970|gb|EG713132.1|EG713132
genomic: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAGgtatgtttta ... gttcttccagATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCA
EST: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGATAAG ATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCAEST: gi|15008789|gb|AU223177.1|AU223177
genomic: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAGgtatgtttta ... gttcttccagATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCA
EST: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAG ATTGTCAACCCTCCCAACAAGAACATCAGAGACATCCCAGGACTGGCACCA
genomic: CATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAGgtatgtttta ... gttcttccagATTGTCAACCCTCACAACAAGAACATCAGAGACATCCCAGGACTGGCACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAGgtatgttttaattgcttttgcaaatgtacccatgttgtttaccttaggtgacatcacttgttgagataaaaactgatcctatatcctccgtatgtgcaag
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