1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAGgtcagtgtcctaataatcatttcatctgcgaagtagtgtgataatcagtttaatcactgcccccattgcccgcagaaagaatcttaagtgattttcaata...
species | Oryza sativa |
transcript | LOC_Os07g32460.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTGGTGATTATGTCGTTGTTCGTCAG ATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGGEST: gi|88485339|gb|CI422610.1|CI422610
genomic: TTGGTGATTATGTCGTTGTTCGTCAGgtcagtgtcc ... tctgctctagATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGG
EST: TGGTGATTATGTCGTTGTTCGTCAG ATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGGEST: gi|89172885|gb|CI040778.1|CI040778
genomic: TGGTGATTATGTCGTTGTTCGTCAGgtcagtgtcc ... tctgctctagATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGG
EST: AGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAG ATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGGEST: gi|88508762|gb|CI436268.1|CI436268
genomic: AGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAGgtcagtgtcc ... tctgctctagATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGG
EST: TTGTTCGTCAG ATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGGEST: gi|88265548|gb|CI376450.1|CI376450
genomic: TTGTTCGTCAGgtcagtgtcc ... tctgctctagATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGG
EST: TTGGTGATTATGTCGTTGTTCGTCAG ATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGGEST: gi|86831642|gb|CI301492.1|CI301492
genomic: TTGGTGATTATGTCGTTGTTCGTCAGgtcagtgtcc ... tctgctctagATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGG
EST: CAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAG ATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGGEST: gi|86477363|gb|CI119996.1|CI119996
genomic: CAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAGgtcagtgtcc ... tctgctctagATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGG
EST: CAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAG ATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGGEST: gi|89167661|gb|CI109062.1|CI109062
genomic: CAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAGgtcagtgtcc ... tctgctctagATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGG
EST: CAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAG ATTGCCCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGGEST: gi|2431289|gb|C73709.1|C73709
genomic: CAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAGgtcagtgtcc ... tctgctctagATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGG
EST: ATGTCGTTGTTCGTCAG ATTGCTCCGAATGGTTGGGCCGAA-GAGAATGCAAGGGGGTGGCAGGATGGEST: gi|86827427|gb|CI272824.1|CI272824
genomic: ATGTCGTTGTTCGTCAGgtcagtgtcc ... tctgctctagATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGG
EST: CAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAG ATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGGEST: gi|86433112|gb|CI093455.1|CI093455
genomic: CAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAGgtcagtgtcc ... tctgctctagATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGG
EST: CAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAG ATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGGEST: gi|86431539|gb|CI085150.1|CI085150
genomic: CAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAGgtcagtgtcc ... tctgctctagATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGG
EST: CAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAG ATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGGEST: gi|88420470|gb|CI562104.1|CI562104
genomic: CAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAGgtcagtgtcc ... tctgctctagATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGG
EST: TTGTTGGTGATTATGTCGTTGTTCGTCAG ATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGGEST: gi|3763693|gb|AU030445.1|AU030445
genomic: TTGTTGGTGATTATGTCGTTGTTCGTCAGgtcagtgtcc ... tctgctctagATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGG
EST: CAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAG ATTGCTCCGAATGGTTGGGCCGAAGGNGAATGCAAGGGGGTGGCAGGATGGEST: gi|88409439|gb|CI561925.1|CI561925
genomic: CAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAGgtcagtgtcc ... tctgctctagATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGG
EST: TAATTGTTGGTGATTATGTCGTTGTTCGTCAG ATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGG
genomic: TAATTGTTGGTGATTATGTCGTTGTTCGTCAGgtcagtgtcc ... tctgctctagATTGCTCCGAATGGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAGgtcagtgtcctaataatcatttcatctgcgaagtagtgtgataatcagtttaatcactgcccccattgcccgcagaaagaatcttaagtgattttcaata
- - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaagaa