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CTTCTAGAAACTAGGAAAGGACGCTGTGGAGAATGGGCCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTGgttagttccataatattcataaatttgttttatccacaatgatatacaatttgcttataattgtaagcggctctccattcgtccacttgtcagtatactt...
species | Oryza sativa |
transcript | LOC_Os07g31460.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTG ATTCTGGATTTCACTGATCATGTGTGGACAGAGTGTTTTTCAAACTTGTATEST: gi|29678551|gb|CB674826.1|CB674826
genomic: CCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTGgttagttcca ... taatttatagATTCTGGATTTCACTGATCATGTGTGGACAGAGTGTTTTTCAAACTTGTAT
EST: CCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTG ATTCTGGATTTCACTGATCATGTGTGGACAGAGTGTTTTTCAAACTTGTATEST: gi|58696150|gb|CK084837.1|CK084837
genomic: CCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTGgttagttcca ... taatttatagATTCTGGATTTCACTGATCATGTGTGGACAGAGTGTTTTTCAAACTTGTAT
EST: CCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTG ATTCTGGATTTCACTGATCATGTGTGGACAGAGTGTTTTTCAAACTTGTAT
genomic: CCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTGgttagttcca ... taatttatagATTCTGGATTTCACTGATCATGTGTGGACAGAGTGTTTTTCAAACTTGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTAGAAACTAGGAAAGGACGCTGTGGAGAATGGGCCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTGgttagttccataatattcataaatttgttttatccacaatgatatacaatttgcttataattgtaagcggctctccattcgtccacttgtcagtatactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC