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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTAATTCCATCGTGTATCCTTTTACATCCATTCCACTCTTGGCTTACTGTACATTGCCAGCCATCTGTTTGCTAACTGGGAAGTTTATCACTCCAGAGgtaaatcttattcaactttcagttctgttccgtatgcagttgctgtgatttgagccttacatttcccttcctgttctgttgtgcag

Basic information

species Oryza sativa
transcript LOC_Os07g24190.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g24190.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G025231_T01 (Zea mays), 5'ss of exon 13
CATTAATTCCATCGTGTATCCTTTTACATCCATTCCACTCTTGGCTTACTGTACATTGCCAGCCATCTGTTTGCTAACTGGGAAGTTTATCACTCCAGAGgtaaatcttattcaactttcagttctgttccgt------atgcagttgctgtgatttgagc-----cttacatttcccttc-ctgttctgttg--tgcag
||| || ||||||||||||||||  ||||| ||||| ||||||||||||||||||||||| |||||||||||  | || ||||| |||||||||||||||||||| ||||  ||||| |   || |  | ||       |  |   |  |||   ||| ||     || |   ||   ||| |||||   |    |||||
CATCAACTCCATCGTGTATCCTTGGACATCTATTCCCCTCTTGGCTTACTGTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagcttaagcaactatagtttgttgttcgagaaaaaaaactagttttgtatattgtgcaatgtctgaagcttatgttcactgtttcatctgctgcag

upper sequence: LOC_Os07g24190.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G028353_T01 (Zea mays), 5'ss of exon 13
CATTAATTCCATCGTGTATCCTTTTACATCCATTCCACTCTTGGCTTACTGTACATTGCCAGCCATCTGTTTGCTAACTGGGAAGTTTATCACTCCAGAGgtaaatcttattcaactttcagttctgttccgtatgcag--------------------ttgctgtga----tttgagccttacatttcccttcctgttctgttgtgcag
||| || ||||||||||||||||  ||||| || || ||||||||||||||||||||||| |||||||||||  | || ||||| |||||||||||||||||||| |||| |||||| | |||| ||||   |  | |                     ||| ||||     | ||| |||||  ||  |  |    | ||| ||     
CATCAACTCCATCGTGTATCCTTGGACATCTATCCCCCTCTTGGCTTACTGTACATTGCCTGCCATCTGTTTATTGACGGGGAAATTTATCACTCCAGAGgtaaagcttaatcaactat-agttttgttgtttgagaaaaaacaaaactatagttttgtttgttgtggaatgtctgaaccttatgttcactgtttcat-ctgctgcag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675228|gb|CB671503.1|CB671503
EST:     GTACATTGCCAGCCATCTGTTTGCTAACTGGGAAGTTTATCACTCCAGAG                         CTTACGAATGTTGCCAGTCTCTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: GTACATTGCCAGCCATCTGTTTGCTAACTGGGAAGTTTATCACTCCAGAGgtaaatctta ... tgttgtgcagCTTACGAATGTTGCCAGTCTCTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: gi|88592814|gb|CI710942.1|CI710942
EST:     GTACATTGCCAGCCATCTGTTTGCTAACTGGGAAGTTTATCACTCCAGAG                         CTTACGAATGTTGCCAGTCTCTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: GTACATTGCCAGCCATCTGTTTGCTAACTGGGAAGTTTATCACTCCAGAGgtaaatctta ... tgttgtgcagCTTACGAATGTTGCCAGTCTCTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: gi|29628005|gb|CB633016.1|CB633016
EST:     GTACATTGCCAGCCATCTGTTTGCTAACTGGGAAGTTTATCACTCCAGAG                         CTTACGAATGTTGCCAGTCTCTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: GTACATTGCCAGCCATCTGTTTGCTAACTGGGAAGTTTATCACTCCAGAGgtaaatctta ... tgttgtgcagCTTACGAATGTTGCCAGTCTCTGGTTCATGTCACTTTTTATCTGCATTTTT