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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTTCGCTTGTGGTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATAGgtacatggtacaaatgttctactttactctgcctagctacatatcatgtccgggaagtgtgctttcttagttctttgctggaaaaattgttgcactctta...

Basic information

species Oryza sativa
transcript LOC_Os07g22400.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g22400.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G130351_T01 (Zea mays), 5'ss of exon 9
GTTGTTTCGCTTGTGGTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATAGgtacatggtacaaatgttctactttactctgcctagctacatatcatgtccgggaagtgtgctttcttagttctttgctggaaaaattgttgcactctta------
|| |||||||| |||||||| ||||||||||||||||| || |||||||||| ||||||||| ||||| |||||||    ||| |||||| ||    |   |||      ||||   | |||  | ||| |||| |||| || | | |||  | |||     |||      
GTGGTTTCGCTAGTGGTTACTCAATTCCGCTGCAATATTTCAAAGGCACTTGCTTTAACAAACAGgtatatggtacgctagttttactttgct----cgtactatgggatatgttttg-aagccttcttacttaattctctg-taggaaatctcttgtggctttagatata

upper sequence: LOC_Os07g22400.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G044317_T03 (Zea mays), 5'ss of exon 9
GTTGTTTCGCTTGTGGTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATAGgtacatggtacaaatgttctactttactctgcctagctacatatcatgtccgggaagtgtgctttcttagttctttgctggaaaaattgttgcactctta-------
|| ||||| || |||||||| |||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||   ||| ||||||  || |  || ||    | ||| |       ||  || || ||| || | ||  || |||  | ||| ||            
GTGGTTTCTCTAGTGGTTACTCAATTCCGCTGCAATATCTCAAAGGCACTTGCTTTAACAAACAGgtacatggtacactagttttactttgatcag--tacctgtggaacatatttc---tgtaagcctt-ttaattatctgg-gggaaatcttttgtacctacgttatctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|3766960|gb|AU031070.1|AU031070
EST:     GTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATAG                         AAAATGGACGGCCACCATTAAGGAACAAGAAAAGGATAGGTTGACTCCT
genomic: GTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATAGgtacatggta ... cgatgtacagAAAATGGACGGCCACCATTAAGGAACAAGAAAAGGATAGGTTGACTCCT
EST: gi|58684951|gb|CK073638.1|CK073638
EST:     GTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATAG                         AAAATGGACGGCCAC
genomic: GTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATAGgtacatggta ... cgatgtacagAAAATGGACGGCCAC