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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTCAAGGATGATCCATACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaagcaaagtacagtacgcctttagttctgatttattttgctgggtcaggaagacagacataaatagttatgaacttatcccttctctcttctatcaacag

Basic information

species Oryza sativa
transcript LOC_Os07g14270.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g14270.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G358059_T01 (Zea mays), 5'ss of exon 9
ACTTCAAGGATGATCCATACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaagcaaagtacagtacgcctttagttctgatttattttgctgggtcaggaagacagacataaatagttatgaacttatcccttctctcttctatcaacag
| || ||||||||||||||||| || || || |||||| |||||||||||||||||||| ||||||||||  ||   | | |||              | |||   |  | |  || | |||| | ||||       | |||||||  | | |   ||   | ||||||  ||||
ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTGGCATTGAGCTGTGGCAGgtcggtgttggatagt------------cggatct---tcctctctcttgttcagaaggacat-----cacagttatg--cctctttttttgtttttctatgtacag

upper sequence: LOC_Os07g14270.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G074687_T01 (Zea mays), 5'ss of exon 9
ACTTCAAGGATGATCCATACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaagcaaagtacagtacgcctttagttctgatttattttgctgggtcaggaagacagacataaatagttatgaacttatcccttctctcttctatcaacag
| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||| ||||||||||| ||   | | |||                 | ||| |   || || | |||| | ||||       | |||||||         |   | | ||||||  ||||
ATTTCAAGGATGATCCGTACATTTATGCATTTGACAGCCTGAAATACATTGGCATTGAGCTGTGGCAGgttggtgttggatagt-----------------cagatcttcctttcttgttcagaatgacat-----cacagttatg---------ccctttttttctatgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89174203|gb|CI042096.1|CI042096
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|29629339|gb|CB634350.1|CB634350
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88959220|gb|CI092949.1|CI092949
EST:     GCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: GCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88903989|gb|CI006222.1|CI006222
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|29623310|gb|CB628321.1|CB628321
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|286955|gb|D15762.1|D15762
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88967968|gb|CI098210.1|CI098210
EST:     TGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGGG
genomic: TGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|11610425|gb|AU166101.1|AU166101
EST:     CTATGCTTTTGACANCCTGAAGTACATTGGCCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGAC-ACTTCCTTATTACTGACGACCCTGAG
genomic: CTATGCTTTTGACAGCCTGAAGTACATTGG-CATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|29658654|gb|CB654929.1|CB654929
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86594259|gb|CI251131.1|CI251131
EST:     GACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: GACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86426653|gb|CI071750.1|CI071750
EST:     TCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: TCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88840176|gb|CI079630.1|CI079630
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGACAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88903159|gb|CI088697.1|CI088697
EST:     TTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: TTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86540284|gb|CI180490.1|CI180490
EST:     TGGCATTGAGTTTTGGCAG                         GTCAGATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAT
genomic: TGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88964704|gb|CI070050.1|CI070050
EST:     ATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|89182828|gb|CI045586.1|CI045586
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86593321|gb|CI257961.1|CI257961
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|11610430|gb|AU166106.1|AU166106
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|22308034|gb|BQ909256.1|BQ909256
EST:     CCTGAAGTACATTGGCAT-GAGTTGTG-CAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: CCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88829563|gb|CI074433.1|CI074433
EST:     GCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: GCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|58685247|gb|CK073934.1|CK073934
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|396941542|gb|HO188751.1|HO188751
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|14192066|gb|AU184277.1|AU184277
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|33799751|gb|CF325741.1|CF325741
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|15851813|gb|BI800089.1|BI800089
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGAC-ACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88834065|gb|CI077546.1|CI077546
EST:     GCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: GCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86435424|gb|CI106657.1|CI106657
EST:     ACAGCCTGAAGTACATTGGCATTGAGTTGTGNCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88990343|gb|CI107769.1|CI107769
EST:     GAAGTACATTGGCATTGAGTTGTGCCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: GAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88956087|gb|CI092375.1|CI092375
EST:     TCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTGGACAACTTCCTTATTACTGACGACCCTGAG
genomic: TCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|29662654|gb|CB658929.1|CB658929
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86497286|gb|CI139919.1|CI139919
EST:     ACATCTATGCTTTTGACAGCNTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|29644253|gb|CB649260.1|CB649260
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86538403|gb|CI178609.1|CI178609
EST:     TGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: TGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88220978|gb|CI220934.1|CI220934
EST:     CAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: CAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86413062|gb|CI067467.1|CI067467
EST:     AGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: AGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|89167504|gb|CI108905.1|CI108905
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTTGGACAACTTCCTTATTGCTGACGAGCCCT
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTG-TTT-GACAACTTCCTTATTACTGACGA-CCCT
EST: gi|29673077|gb|CB669352.1|CB669352
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGCCCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86253194|gb|CI058119.1|CI058119
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|66915891|gb|CX102739.1|CX102739
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGGTTGAAAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86251547|gb|CI016836.1|CI016836
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|8856749|gb|AU094067.1|AU094067
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|89193765|gb|CI116398.1|CI116398
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86252238|gb|CI055975.1|CI055975
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88976988|gb|CI257684.1|CI257684
EST:     GCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGATCCTGAG
genomic: GCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|58592538|gb|CF990846.1|CF990846
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGAGCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88991014|gb|CI108401.1|CI108401
EST:     TGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACGACTTCCTTATTACTGACGACCCTGAG
genomic: TGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|29662655|gb|CB658930.1|CB658930
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86537256|gb|CI177462.1|CI177462
EST:     TTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: TTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88996495|gb|CI259999.1|CI259999
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|87032979|gb|CI187603.1|CI187603
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86413173|gb|CI067578.1|CI067578
EST:     TGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: TGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86600080|gb|CI258420.1|CI258420
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86428149|gb|CI074830.1|CI074830
EST:     GCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: GCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88960520|gb|CI006481.1|CI006481
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88828949|gb|CI073819.1|CI073819
EST:     CTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: CTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88962550|gb|CI097702.1|CI097702
EST:     ATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86255007|gb|CI017127.1|CI017127
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88249979|gb|CI249828.1|CI249828
EST:     TGAGTTGTGGTAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: TGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88981016|gb|CI021143.1|CI021143
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGGCCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|89193031|gb|CI050329.1|CI050329
EST:     CTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: CTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88247466|gb|CI247315.1|CI247315
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATCGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|3760360|gb|C97614.1|C97614
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|87042082|gb|CI194706.1|CI194706
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86418680|gb|CI053481.1|CI053481
EST:     ATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCGAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|29663170|gb|CB659445.1|CB659445
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|8528286|gb|AU093101.1|AU093101
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCNTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88968307|gb|CI098549.1|CI098549
EST:     ATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86523269|gb|CI163475.1|CI163475
EST:     CTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: CTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|29660493|gb|CB656768.1|CB656768
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88215295|gb|CI215144.1|CI215144
EST:     ACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|29660220|gb|CB656495.1|CB656495
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88250097|gb|CI249946.1|CI249946
EST:     GACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: GACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|29629338|gb|CB634349.1|CB634349
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|88989387|gb|CI043876.1|CI043876
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|58679227|gb|CK067914.1|CK067914
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|86481114|gb|CI123747.1|CI123747
EST:     ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCTGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: gi|87033375|gb|CI187999.1|CI187999
EST:     ACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG                         GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTTCAAGGATGATCCATACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaagcaaagtacagtacgcctttagttctgatttattttgctgggtcaggaagacagacataaatagttatgaacttatcccttctctcttctatcaacag

- - - - - - - - - - - - - - - - - - - CTGAAG