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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAAGTCCTCAGTGGCCTGTGCTTCCTCAGGGCACATCGATGTCCCAGCATCCACATTTATATGCATCTCCTTGTCCGGGCTTCTTTGTGAACCTCAGGgtatatctatcatcaaaacttatatgcaatttgaaaagacagttaaacttgtttcaagttaacattcgattgctaattagctactacttccatgctccta...

Basic information

species Oryza sativa
transcript LOC_Os07g13170.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g13170.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G176175_T01 (Zea mays), 5'ss of exon 9
AATAAGTCCTCAGTGGCCTGTGCTTCCTCAGGGCACATCGATGT---CCCAGCATCCACATTTATATGCATCTCCTTGTCCGGGCTTCTTTGTGAACCTCAGGgtatatctatca-tcaaaacttatatgcaatttgaaaagacagttaaacttgtttcaagttaacattcgattgctaattagctactacttccatgctccta---
     | || ||||||||||| | ||||||  ||| |||||||    |||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||  |||  |  |||    || |  |   | ||  | | ||   ||   |  ||  ||||| || |   ||   ||    | | || |      ||| ||   
---GGGCCCCCAGTGGCCTGTCCATCCTCACAGCAGATCGATGCGGCCCCAGCATCCACATCTGTATGCATCTCCTTGTCCAGGCTTCTTTGTGAACCTCAGGgtaactcttacgctcatgtttttttcgtgttctgtcatggca---aagtgtagttatagttaccactgacttttgaacgcacaatta-tgaagcactcatataa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29677592|gb|CB673867.1|CB673867
EST:     ATCCACATTTATATGCATCTCCTTGTCCGGGCTTCTTTGTGAACCTCAGG                         GAAGTACCTATGGAGAAAAGACCTGAGTTGGGTCCCCAGTCGTTCCCTACT
genomic: ATCCACATTTATATGCATCTCCTTGTCCGGGCTTCTTTGTGAACCTCAGGgtatatctat ... gtcactgcagGAAGTACCTATGGAGAAAAGACCTGAGTTGGGTCCCCAGTCGTTCCCTACT
EST: gi|88224266|gb|CI224115.1|CI224115
EST:     ATCCACATTTATATGCATCTCCTTGTCCGGGCTTCTTTGTGAACCTCAGG                         GAAGTACCTATGGAGAAAAGACCTGAGTTGGGTCCCCAGTCGTTCCCTACT
genomic: ATCCACATTTATATGCATCTCCTTGTCCGGGCTTCTTTGTGAACCTCAGGgtatatctat ... gtcactgcagGAAGTACCTATGGAGAAAAGACCTGAGTTGGGTCCCCAGTCGTTCCCTACT
EST: gi|58587235|gb|CF985543.1|CF985543
EST:     ATCCACATTTATATGCATCTCCTTGTCCGGGCTTCTTTGTGAACCTCAGG                         GAAGTACCTATGGAGAAAAGACCTGAGTTGGGTCCCCAGTCGTTCCCTACT
genomic: ATCCACATTTATATGCATCTCCTTGTCCGGGCTTCTTTGTGAACCTCAGGgtatatctat ... gtcactgcagGAAGTACCTATGGAGAAAAGACCTGAGTTGGGTCCCCAGTCGTTCCCTACT
EST: gi|86509887|gb|CI152520.1|CI152520
EST:     ATCCACATTTATATGCATCTCCTTGTCCGGGCTTCTTTGTGAACCTCAGG                         GAAGTACCTATGGAGAAAAGACCTGAGTTGGGTCCCCAGTCGTTCCCTACT
genomic: ATCCACATTTATATGCATCTCCTTGTCCGGGCTTCTTTGTGAACCTCAGGgtatatctat ... gtcactgcagGAAGTACCTATGGAGAAAAGACCTGAGTTGGGTCCCCAGTCGTTCCCTACT
EST: gi|58659433|gb|CK048113.1|CK048113
EST:     ATCCACATTTATATGCATCTCCTTGTCCGGGCTTCTTTGTGAAGCTCAGG                         GAAGTACCTATGGAGAAAAGACCTGAGTTGGGTCCCCAGTCGTTCCCTACT
genomic: ATCCACATTTATATGCATCTCCTTGTCCGGGCTTCTTTGTGAACCTCAGGgtatatctat ... gtcactgcagGAAGTACCTATGGAGAAAAGACCTGAGTTGGGTCCCCAGTCGTTCCCTACT