1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTTGGAAGCTTGATTTCATGTGAATCCTTCCATGCAGATGTGCATGCAGGAAATTTATGGTTGCTCCGAGATGGACGTGTTGGATTTCTTGATTTTGgtatgtaacatattctccaatctccacggtggcacggttgctctatatctcattaggcaatttaggatgcaccttgtatttgctaaaaaaggaaatattctggccttttaattcttacattatctattagtcaaaacacaaagtggtcaagaaagtttatcactattggttaataccatttcacag
species | Oryza sativa |
transcript | LOC_Os07g12530.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTCGGATTTCTTGATTTTG GAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTTEST: gi|29615506|gb|CB620518.1|CB620518
genomic: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTTGGATTTCTTGATTTTGgtatgtaaca ... catttcacagGAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTT
EST: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTCGGATTTCTTGATTTTG GAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTTEST: gi|29615267|gb|CB620279.1|CB620279
genomic: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTTGGATTTCTTGATTTTGgtatgtaaca ... catttcacagGAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTT
EST: GAGATGGACGTGTCGGATTTCTTGATTTTG GAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTTEST: gi|29677141|gb|CB673416.1|CB673416
genomic: GAGATGGACGTGTTGGATTTCTTGATTTTGgtatgtaaca ... catttcacagGAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTT
EST: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTTGGATTTCTTGATTTTG GAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTTEST: gi|29615076|gb|CB620089.1|CB620089
genomic: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTTGGATTTCTTGATTTTGgtatgtaaca ... catttcacagGAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTT
EST: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTCGGATTTCTTGATTTTG GAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTTEST: gi|29619071|gb|CB624083.1|CB624083
genomic: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTTGGATTTCTTGATTTTGgtatgtaaca ... catttcacagGAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTT
EST: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTCGGATTTCTTGATTTTG GAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTTEST: gi|29615292|gb|CB620304.1|CB620304
genomic: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTTGGATTTCTTGATTTTGgtatgtaaca ... catttcacagGAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTT
EST: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTCGGATTTCTTGATTTTG GAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTTEST: gi|33796723|gb|CF324229.1|CF324229
genomic: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTTGGATTTCTTGATTTTGgtatgtaaca ... catttcacagGAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTT
EST: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTTGGATTTCTTGATTTTG GAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTG-AANTGGAGGTCTTTEST: gi|29615297|gb|CB620309.1|CB620309
genomic: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTTGGATTTCTTGATTTTGgtatgtaaca ... catttcacagGAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAA-TGGAGGTCTTT
EST: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTCGGATTTCTTGATTTTG GAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTTEST: gi|29615223|gb|CB620236.1|CB620236
genomic: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTTGGATTTCTTGATTTTGgtatgtaaca ... catttcacagGAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTT
EST: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTCGGATTTCTTGATTTTG GAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTT
genomic: AGGAAATTTATGGTTGCTCCGAGATGGACGTGTTGGATTTCTTGATTTTGgtatgtaaca ... catttcacagGAATTGTTGGCCGGATATCGCCAAGGACCTGGGCTGCAATGGAGGTCTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGGAAGCTTGATTTCATGTGAATCCTTCCATGCAGATGTGCATGCAGGAAATTTATGGTTGCTCCGAGATGGACGTGTTGGATTTCTTGATTTTGgtatgtaacatattctccaatctccacggtggcacggttgctctatatctcattaggcaatttaggatgcaccttgtatttgctaaaaaaggaaatattctggccttttaattcttacattatctattagtcaaaacacaaagtggtcaagaaagtttatcactattggttaataccatttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA