1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAAAGTTGCGATTGAGCATATTCTGGAGCCAAAGAATTCTATACAACTTCTTGAAGTTGCCGAGTCCTTGGAAGCTAAGGAGCTCAAGAAGCACTGCGAGgtaccatgcttatgttctcactttgcaagcatttattctgcattcttctgtttgttcatggccttggtgcctatgttctctctttttcatataacaattcctggcggttccgtgtgatgcag
species | Oryza sativa |
transcript | LOC_Os07g07080.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTGAAGTTGCCGAGTCCTTGGAAGCTAAGGAGCTCAAGAAGCACTGCGAG GATATAGCTATTCGCAATCTTGATTACATTTTCACAGTGGCAGCTCCATCAEST: gi|29689655|gb|CB685930.1|CB685930
genomic: TTGAAGTTGCCGAGTCCTTGGAAGCTAAGGAGCTCAAGAAGCACTGCGAGgtaccatgct ... tgtgatgcagGATATAGCTATTCGCAATCTTGATTACATTTTCACAGTGGCAGCTCCATCA
EST: TTGAAGTTGCCGAGTCCTTGGAAGCTAAGGAGCTCAAGAAGCACTGCGAG GATATAGCTATTCGCAATCTTGATTACATTTTCACAGTGGCAGCTCCATCAEST: gi|11544390|gb|BF475208.1|BF475208
genomic: TTGAAGTTGCCGAGTCCTTGGAAGCTAAGGAGCTCAAGAAGCACTGCGAGgtaccatgct ... tgtgatgcagGATATAGCTATTCGCAATCTTGATTACATTTTCACAGTGGCAGCTCCATCA
EST: TTGAAGTTGCCGAGTCCTTGGAAGCTAAGGAGCTCAAGAAGCACTGCGAG GATATAGCTATTCGCAATCTTGATTACATTTTCACAGTGGCAGCTCCATCA
genomic: TTGAAGTTGCCGAGTCCTTGGAAGCTAAGGAGCTCAAGAAGCACTGCGAGgtaccatgct ... tgtgatgcagGATATAGCTATTCGCAATCTTGATTACATTTTCACAGTGGCAGCTCCATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGTTGCGATTGAGCATATTCTGGAGCCAAAGAATTCTATACAACTTCTTGAAGTTGCCGAGTCCTTGGAAGCTAAGGAGCTCAAGAAGCACTGCGAGgtaccatgcttatgttctcactttgcaagcatttattctgcattcttctgtttgttcatggccttggtgcctatgttctctctttttcatataacaattcctggcggttccgtgtgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC