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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaacttgttctgcacttcctttgatttccttttttctatgcaaaatatgcgttttactagtgtacaacatcatgatattttttttgcgattgttcctgggcattattggtctctgacctttgatttggtgtaccattgccatgcacttatataacattggatgattgcag

Basic information

species Oryza sativa
transcript LOC_Os07g02350.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g02350.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM5G845755_T01 (Zea mays), 5'ss of exon 8
GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact-tgttctgcacttcctttgatttccttttttctatgcaaaatatgcgttttactagtgtacaacatcatgatattttttttgcgattgttcctgggcattattggtctctgacctttgatttggtgtaccattgccatgcacttatataacattggatgattgcag
||||| |||||||| ||||||||| | || |||||||| ||||| || |||||||||||||||||||||||||||  |  ||| ||  | ||   | |  |    |||  |   ||||| ||  |   |  ||  | | ||  ||    | || |||   |  |    | ||                                                                         
GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttccctgtgcttaattttggtggcatgtaatttggcagcgcaaagtacac---tggcttttct-cactattgctaaatatttggcgtaaagtatactc------------------------------------------------------------------------

upper sequence: LOC_Os07g02350.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G143602_T01 (Zea mays), 5'ss of exon 9
GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaacttgttctgcacttcctttgatttccttttttctatgcaaaatatg-cgttttactagtgtacaacatcatgatattttttttgcgattgttcctgggcattattggtctctgacctttgatttggtgtaccattgccatgcacttatataacattggatgattgcag
||||| |||||||||||||||||| | || |||||||| ||||| || |||||||||| |||||||||||| | |    |   | |  ||   ||| |||   |||      ||   | | ||  |  ||     | || |   |                                                                                                    
GCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTTACTGCACTTGAAGCTATGgtgaat----ttcccagtgctagttttaattgt-tttgggaggtgtggattgtgatgccttgtcgttttatattgttgcag-----------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2317547|gb|C22601.1|C22601
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|58686212|gb|CK074899.1|CK074899
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|89194544|gb|CI116981.1|CI116981
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|29616864|gb|CB621876.1|CB621876
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|89194075|gb|CI116512.1|CI116512
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|94362908|gb|CI053069.1|CI053069
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|89174479|gb|CI110677.1|CI110677
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|88957426|gb|CI095367.1|CI095367
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|89182018|gb|CI113524.1|CI113524
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|88958067|gb|CI095624.1|CI095624
EST:     AGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|86488366|gb|CI130999.1|CI130999
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|2317324|gb|C22378.1|C22378
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|58679114|gb|CK067801.1|CK067801
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|89182336|gb|CI113705.1|CI113705
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|86491402|gb|CI134035.1|CI134035
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|58598121|gb|CK008649.1|CK008649
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACAACCATACTTTCTCCAAGTGAGGGCTGCGGAGAACA
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACA
EST: gi|29657466|gb|CB653741.1|CB653741
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|2796293|gb|AA749587.1|AA749587
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTT-CTGCACGTGA-GCTATG                         GCACACC-ATACTT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTT
EST: gi|88993477|gb|CI110298.1|CI110298
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|86419015|gb|CI053816.1|CI053816
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|89181558|gb|CI113064.1|CI113064
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|29662231|gb|CB658506.1|CB658506
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|89194752|gb|CI117189.1|CI117189
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|66916011|gb|CX102859.1|CX102859
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|27577759|gb|CB000454.1|CB000454
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|86418789|gb|CI053590.1|CI053590
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|88313574|gb|CI671699.1|CI671699
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|89180390|gb|CI044669.1|CI044669
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|86259780|gb|CI065653.1|CI065653
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|86425532|gb|CI070629.1|CI070629
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|89169654|gb|CI110013.1|CI110013
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|29663347|gb|CB659622.1|CB659622
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|86864819|gb|CI344303.1|CI344303
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|29661178|gb|CB657453.1|CB657453
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|29619982|gb|CB624994.1|CB624994
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|88366974|gb|CI553864.1|CI553864
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|86490821|gb|CI133454.1|CI133454
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|86835422|gb|CI347879.1|CI347879
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
EST: gi|86524746|gb|CI164952.1|CI164952
EST:     AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG                         GCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT
genomic: AGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 72 (downstream exon)
Score: 53

GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaact ... atgattgcagGCACACCCATACTTTCTCCAAGTGAGGGCTGCGGAGAACAGTAGGCCTCGTGCACAATAGACAAAAGAACGGGACTATTGCTGACTGTCGATTAGCAGCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGgtaagtaacttgttctgcacttcctttgatttccttttttctatgcaaaatatgcgttttactagtgtacaacatcatgatattttttttgcgattgttcctgggcattattggtctctgacctttgatttggtgtaccattgccatgcacttatataacattggatgattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC