1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TAATAAGAGCCTCTCATGCTTGAGCGATGTAATCTTCTCCATTGCAAAGAAAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAGgtaaattctaagcactcagctaagaatatctgcaaacttgttctagtttccgtggctataatgtgtgaatgattttgttccccttggacacag
species | Oryza sativa |
transcript | LOC_Os07g01490.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TACTTGCTACAN CCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCAEST: gi|86482699|gb|CI125332.1|CI125332
genomic: TACTTGCTACAGgtaaattcta ... ttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
EST: AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAG CCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCAEST: gi|58686047|gb|CK074734.1|CK074734
genomic: AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAGgtaaattcta ... ttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
EST: AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAG CCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCAEST: gi|88989368|gb|CI043867.1|CI043867
genomic: AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAGgtaaattcta ... ttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
EST: AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAG CCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCAEST: gi|58681647|gb|CK070334.1|CK070334
genomic: AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAGgtaaattcta ... ttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
EST: AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAG CCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCAEST: gi|88273313|gb|CI388769.1|CI388769
genomic: AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAGgtaaattcta ... ttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
EST: AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAG CCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCAEST: gi|58684836|gb|CK073523.1|CK073523
genomic: AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAGgtaaattcta ... ttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
EST: TACTTGCTACAG CCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
genomic: TACTTGCTACAGgtaaattcta ... ttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAATAAGAGCCTCTCATGCTTGAGCGATGTAATCTTCTCCATTGCAAAGAAAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAGgtaaattctaagcactcagctaagaatatctgcaaacttgttctagtttccgtggctataatgtgtgaatgattttgttccccttggacacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA