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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGAAATTATGACACTTACACGGGCTACGCCGTTTGATTATGGCAGTGGTGCGGTTAACCCAAAAGCCGCCCTGGATCCTGGCCTTGTTCTGGATGCAAgtaagttaaatttttcgtatgcaattttttaataaattcaaactgctccatgttattcagacaataatctgaagaccattctaagtttgaatttttttttgttggtag

Basic information

species Oryza sativa
transcript LOC_Os06g48650.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g48650.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G114394_T01 (Zea mays), 5'ss of exon 10
TCAGAAATTATGACACTTACACGGGCTACGCCGTTTGATTATGGCAGTGGTGCGGTTAACCCAAAAGCCGCCCTGGATCCTGGCCTTGTTCTGGATGCAAgtaagttaaatttttcgtatgcaattttttaataaattcaaactgctccatgttattcagacaataat--ctga--agaccattctaagtttgaattttt-------ttttgttggtag-------------------------------
|| ||||| ||||||||| | ||||| || |||||||||| ||| ||||| || |||||||||||||| ||||| |||||||| |||||||| |||||||||||||| ||||   |||      ||||    |    | || ||| || | || |||  ||   || |  |||     | | ||| |  |   ||| | |        | | |   | |                               
TCGGAAATGATGACACTTTCTCGGGCCACACCGTTTGATTGTGGTAGTGGCGCTGTTAACCCAAAAGCTGCCCTTGATCCTGGTCTTGTTCTAGATGCAAgtaagttcaattgc-cgtccatttttttcccgtgggat-aagctggtcaaagtaattgggatggtagtgtctggtcgaagctttccagatggtaatgtatagcatccctctttcactcgtctaattttgctcctctattcatgctggcag

upper sequence: LOC_Os06g48650.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G099452_T01 (Zea mays), 5'ss of exon 10
TCAGAAATTATGACACTTACACGGGCTACGCCGTTTGATTATGGCAGTGGTGCGGTTAACCCAAAAGCCGCCCTGGATCCTGGCCTTGTTCTGGATGCAAgtaagttaaat---ttttcgt----atgcaattttttaataaattcaaactgc---------tccatgttattcagacaataatctgaagaccat--tctaagtttgaatttttttttgttggtag
|||||||| ||||||||| ||||||| || ||||| |||| ||||||||| || ||||||||||||| |||||| ||||||||||||||||| || |||||||||  || |   ||||| |    ||       |  ||   ||  |||  ||         |  | ||||||||||    ||| | |   || |  ||||  ||||  || |   |  |||| ||
TCAGAAATGATGACACTTTCACGGGCCACACCGTTCGATTGTGGCAGTGGCGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAAgtaagccaattactttttcatcgaaataagccggtcgaagttatcgaaatggcggtgtcttgttgaagttattcagatggcaatgtaacatccctcatctagttttgctttatccatgcttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27548197|gb|CA767484.2|CA767484
EST:     TGCGGTTAACCCAAAAGCCGCCCTGGATCCTGGCCTTGTTCTGGATGCAA                         CTCATCAAGATTACATCACATTTTTGTGTTCGATCCCCGACGTGGAACACA
genomic: TGCGGTTAACCCAAAAGCCGCCCTGGATCCTGGCCTTGTTCTGGATGCAAgtaagttaaa ... ttgttggtagCTCATCAAGATTACATCACATTTTTGTGTTCGATCCCCGACGTGGAACACA