1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATgtactctctctctctctctctctctctctcttatgtatatttttttttcttgtgtgttactagtattattattttttaattgcacatgaatgatgataagctcgaccgtttacaatgcag
species | Oryza sativa |
transcript | LOC_Os06g47830.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTAT GGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGAEST: gi|88268950|gb|CI380248.1|CI380248
genomic: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATgtactctctc ... tacaatgcagGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGA
EST: ACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAAACATTAT GGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGEST: gi|86493839|gb|CI136472.1|CI136472
genomic: ACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGC-AAACATTATgtactctctc ... tacaatgcagGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTG
EST: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTAT GGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGAEST: gi|66923489|gb|CX110337.1|CX110337
genomic: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATgtactctctc ... tacaatgcagGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGA
EST: CCAAAGCAAACATTAT GGGGGTTGTCAAGCATCTGGCTGCATCAGGCTTTGTCTATTGGACCATTGAEST: gi|88226781|gb|CI224766.1|CI224766
genomic: CCAAAGCAAACATTATgtactctctc ... tacaatgcagGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGA
EST: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTAT GGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGAEST: gi|86488840|gb|CI131473.1|CI131473
genomic: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATgtactctctc ... tacaatgcagGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGA
EST: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTAT GGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGAEST: gi|87027991|gb|CI276347.1|CI276347
genomic: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATgtactctctc ... tacaatgcagGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGA
EST: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTAT GGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGAEST: gi|86493329|gb|CI135962.1|CI135962
genomic: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATgtactctctc ... tacaatgcagGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGA
EST: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTAT GGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGAEST: gi|86832680|gb|CI345097.1|CI345097
genomic: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATgtactctctc ... tacaatgcagGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGA
EST: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTAT GGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGAEST: gi|86429057|gb|CI075738.1|CI075738
genomic: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATgtactctctc ... tacaatgcagGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGA
EST: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTAT GGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGAEST: gi|56158607|gb|AU101573.2|AU101573
genomic: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATgtactctctc ... tacaatgcagGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGA
EST: CACGTTGATGAATTGGTTAGAAGAACTGGNATGCCCAAAGCAAACATTAT GGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGAEST: gi|86483717|gb|CI126350.1|CI126350
genomic: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATgtactctctc ... tacaatgcagGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGA
EST: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTAT GGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGA
genomic: CACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATgtactctctc ... tacaatgcagGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATgtactctctctctctctctctctctctctcttatgtatatttttttttcttgtgtgttactagtattattattttttaattgcacatgaatgatgataagctcgaccgtttacaatgcag
- - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA