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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGTGGCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGgtgagtgtctttcttagactatatgaacatcgaattttcgcttatgattcttacatcattaaattctaacattccctaccatgatattttgcattgttagttctgaatgtgctcctgttatgtacaatgcag

Basic information

species Oryza sativa
transcript LOC_Os06g45850.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88852439|gb|CI374207.1|CI374207
EST:     CAATTCCTTGTACGCAACTGACG                         ATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
genomic: CAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|88279066|gb|CI400066.1|CI400066
EST:     GCTAAGCTTCTTGTGTGAAGTGCACTACAATTCCTTGTACGCNACTGACG                         ATCTCCTAACCCCCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
genomic: GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|14981862|gb|BI306540.1|BI306540
EST:     GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACG                         ATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
genomic: GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|88282809|gb|CI402009.1|CI402009
EST:     GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACG                         ATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
genomic: GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|14981799|gb|BI306477.1|BI306477
EST:     GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACG                         ATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
genomic: GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|86861561|gb|CI328226.1|CI328226
EST:     GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACG                         ATCTCCTAACCCCCAAAACCAAGAAGAAGCATT-GTTTTTCTAGGGCGTCT
genomic: GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|44666588|gb|CR280022.1|CR280022
EST:     GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACG                         ATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
genomic: GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|14980943|gb|BI305621.1|BI305621
EST:     GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACG                         ATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
genomic: GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|88255101|gb|CI353925.1|CI353925
EST:     ATTCCTTGTACGCAACTGACG                         ATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGGTC
genomic: ATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGC-GTC
EST: gi|88842915|gb|CI371815.1|CI371815
EST:     TGAAGTGCACTACAATTCCTTGTACGCAACTGACG                         ATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
genomic: TGAAGTGCACTACAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|88459918|gb|CI524377.1|CI524377
EST:     CAATTCCTTGTACGCAACTGACG                         ATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
genomic: CAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|33686081|gb|CF314320.1|CF314320
EST:     GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACG                         ATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTTTAGGGCGTCT
genomic: GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|88279183|gb|CI400183.1|CI400183
EST:     GCTAAGCTTCTGGTTTGAAGTGCACTACAATTCCTTGTACCCAACTNACG                         ATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
genomic: GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|88277166|gb|CI397968.1|CI397968
EST:     GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACG                         ATCTCCTAACCCNCCAAACCAAGAAGAAGCATTGGTTGTTTTAGGGCGTCT
genomic: GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|88836043|gb|CI371148.1|CI371148
EST:     GCTAAGCTTCT-GTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACG                         ATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
genomic: GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|88266632|gb|CI377534.1|CI377534
EST:     TTCCTTGTACGCAACTGACG                         ATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
genomic: TTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|86537757|gb|CI177963.1|CI177963
EST:     GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACG                         ATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
genomic: GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|88459631|gb|CI521891.1|CI521891
EST:     GCTGAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACG                         ATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
genomic: GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT
EST: gi|88279478|gb|CI400478.1|CI400478
EST:     GCTAAGCTTCTGGTGTGAAGTGCACTACCATTCCTTGTACGCAACTGACG                         ATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTGTAGGGCTTCT
genomic: GCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGgtgagtgtct ... tacaatgcagATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCT