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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGGTGTTATGAAAGTTGAATATCGAATTGCCTTGAGGTCATCGGTTCGAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatccatgtgacttagtatctctttactctccgattacttaaattgtttggcggacaatttataatcaccatagcgtatagtaaatgttttagg...

Basic information

species Oryza sativa
transcript LOC_Os06g39344.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g39344.3 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G047564_T02 (Zea mays), 5'ss of exon 9
GGCTGGTGTTATGAAAGTTGAATATCGAATTGCCTTGAGGTCATCGGTTCGAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatccatgtgacttagtatctctttactctccgattacttaaattgtttggcggacaatt-tataatcaccatagcgtatagtaaatgttttagg-----
|||||||||||||||| | |||||||| |||||||||||||| ||| || |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| ||    |||   || | |  ||  |||  | ||   |   |||    | | |   ||    |   |  | ||| |    | ||     
GGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATTAGAAACGATTTTGTTGAAGGTGTGCGTGCTGTTTTAGTTGACAAGGACCAGgcaagttatccatatgattt----tctggctagtttgaga--actccattttcctaagggattcctatttttccaagggaaaatgaactaatttcccttgggaaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22307146|gb|BQ908368.1|BQ908368
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCC-AAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|11026506|gb|AU163107.1|AU163107
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|29664860|gb|CB661135.1|CB661135
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTTTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTTTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|33814601|gb|CF333165.1|CF333165
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|86867268|gb|CI337784.1|CI337784
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88439762|gb|CI541319.1|CI541319
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88449864|gb|CI539239.1|CI539239
EST:     GAAATGATTTTGTTGAAGGTGTACNTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|86876099|gb|CI325595.1|CI325595
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88438765|gb|CI546247.1|CI546247
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88383599|gb|CI543372.1|CI543372
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|29658500|gb|CB654775.1|CB654775
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|11564971|gb|AU165607.1|AU165607
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCANCTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|29614417|gb|CB619430.1|CB619430
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|86871791|gb|CI331168.1|CI331168
EST:     GAAATGATTTTGTTGAAGGTGTACGTCCTGTCTTAGTTGACAACGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88304480|gb|CI518136.1|CI518136
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88281042|gb|CI402240.1|CI402240
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGATG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88379958|gb|CI513548.1|CI513548
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGGT
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGG-T
EST: gi|88489431|gb|CI426703.1|CI426703
EST:     CGTGCTGTGTTAGTT-ACAAGGACCGG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: CGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|86840686|gb|CI333936.1|CI333936
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACCAAGGGTGAGGT
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGAC-AAGGGTGAGGT
EST: gi|86874376|gb|CI316742.1|CI316742
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88383540|gb|CI543313.1|CI543313
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88258322|gb|CI360908.1|CI360908
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGCTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|86839556|gb|CI339464.1|CI339464
EST:     AAGG-GTACGTGC-GATCGTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: AAGGTGTACGTGCTG-TCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|33813303|gb|CF332538.1|CF332538
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|86418684|gb|CI053485.1|CI053485
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88502702|gb|CI430208.1|CI430208
EST:     GAAATGATTTTNTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|3762933|gb|AU029685.1|AU029685
EST:     NAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGNCCNG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|86859810|gb|CI345448.1|CI345448
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88457040|gb|CI529241.1|CI529241
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88419888|gb|CI516337.1|CI516337
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88455611|gb|CI521831.1|CI521831
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88383595|gb|CI543368.1|CI543368
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|33653651|gb|CF276265.1|CF276265
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|86497764|gb|CI140397.1|CI140397
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|86833940|gb|CI338311.1|CI338311
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88319471|gb|CI518315.1|CI518315
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88275895|gb|CI396499.1|CI396499
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACA-GGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|88265173|gb|CI368947.1|CI368947
EST:     AAATGATTTTGGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: AAATGATTTT-GTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|86835525|gb|CI347982.1|CI347982
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
EST: gi|86420348|gb|CI056337.1|CI056337
EST:     GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG                         AATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG
genomic: GAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 74 (downstream exon)
Score: 72

GGCTGGTGTTATGAAAGTTGAATATCGAATTGCCTTGAGGTCATCGGTTCGAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatc ... caatttgtagAATCCAAAGTGGAAGCCAGCAACTCTGGAAGACGTGGACAAGGGTGAGGTGGAATCAGTTTTTGAACCATTAGCTGCTGAGGCTGAGTTAAATGTATGAT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTGGTGTTATGAAAGTTGAATATCGAATTGCCTTGAGGTCATCGGTTCGAAATGATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgcaagttatccatgtgacttagtatctctttactctccgattacttaaattgtttggcggacaatttataatcaccatagcgtatagtaaatgttttagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG