1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGCTGCACACACATCTAATTCAAGATATGCTTTCTATCTGTCGTGAAACATTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgctttcccttttctgttcatagtttccatgtacctcattgttatcgtatacatatatgtcttagccctcaataatttatgcactttctgctaa...
species | Oryza sativa |
transcript | LOC_Os06g33710.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTEST: gi|29681268|gb|CB677543.1|CB677543
genomic: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
EST: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTEST: gi|33686636|gb|CF314875.1|CF314875
genomic: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
EST: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTEST: gi|29681921|gb|CB678196.1|CB678196
genomic: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGG-TTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACT
EST: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTEST: gi|2311358|gb|C27513.1|C27513
genomic: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
EST: ACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTEST: gi|86494920|gb|CI137553.1|CI137553
genomic: ACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
EST: AGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGGTGAACTEST: gi|86419330|gb|CI054131.1|CI054131
genomic: AGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCA-GTGAACT
EST: AGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTEST: gi|29639075|gb|CB644084.1|CB644084
genomic: AGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
EST: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTEST: gi|8527728|gb|AU092543.1|AU092543
genomic: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
EST: GACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTEST: gi|29665561|gb|CB661836.1|CB661836
genomic: GACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
EST: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTEST: gi|29689098|gb|CB685373.1|CB685373
genomic: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
EST: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTEST: gi|29677613|gb|CB673888.1|CB673888
genomic: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
EST: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTEST: gi|86492595|gb|CI135228.1|CI135228
genomic: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
EST: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTEST: gi|29661774|gb|CB658049.1|CB658049
genomic: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
EST: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTEST: gi|29657895|gb|CB654170.1|CB654170
genomic: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
EST: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTEST: gi|29674258|gb|CB670533.1|CB670533
genomic: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
EST: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTEST: gi|38468529|gb|CF952660.1|CF952660
genomic: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
EST: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTEST: gi|88828363|gb|CI000472.1|CI000472
genomic: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
EST: CTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTEST: gi|9865343|gb|AU101093.1|AU101093
genomic: CTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
EST: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAG TGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
genomic: TTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgct ... gcatttgcagTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTGCACACACATCTAATTCAAGATATGCTTTCTATCTGTCGTGAAACATTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGgtccgttgctttcccttttctgttcatagtttccatgtacctcattgttatcgtatacatatatgtcttagccctcaataatttatgcactttctgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT