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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATTGCAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAGgtgtgtattcatctaatgcacattttgcaataccttggttgtgctggcataattatacgttacattgttgtcag

Basic information

species Oryza sativa
transcript LOC_Os06g30460.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g30460.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G082664_T01 (Zea mays), 5'ss of exon 11
GTGATTGCAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAGgtgtgtattcatcta-------atgcacattttgcaataccttggttgtgctggcataattatacgtt--acattgttgtcag
|| ||||| ||||||||||| |||||||| ||||| ||||||||||| ||| ||||  ||||| ||||||||| |        |||||||| ||    |  | |  |  || |  ||| || ||| |||  |||||||| ||||
GTCATTGCCAAAAGGTTGCTCGAATCAAAACAGACGACTCCACATTTGTATCTATCCAAAGgtttgtattcatatttcattccatgcacatgttat--tttcataatattgttaacatgatgatatgttttacattgttatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58599848|gb|CK010376.1|CK010376
EST:     AAGGTTGCTTGAATCAAAGCAGAACACTCCACATTTATATTTATCACAAG                         ATGTTATACTGGATCCTTTGCTCGCTTTCAGGAATGAACTGAAAG
genomic: AAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAGgtgtgtattc ... ttgttgtcagATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAG
EST: gi|218488261|gb|FG947096.1|FG947096
EST:     AAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAG                         ATGTTATACTGGATCCTTTGCTCGCTTTCAGGAATGAACTGAAAG
genomic: AAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAGgtgtgtattc ... ttgttgtcagATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAG
EST: gi|218481815|gb|FG945396.1|FG945396
EST:     AAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAG                         ATGTTATACTGGATCCTTTGCTCGCTTTCAGGAATGAACTGAAAG
genomic: AAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAGgtgtgtattc ... ttgttgtcagATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAG
EST: gi|58692196|gb|CK080883.1|CK080883
EST:     AAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAG                         ATGTTATACTGGATCCTTTGCTCGCTTTCAGGAATGAACTGAAAG
genomic: AAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAGgtgtgtattc ... ttgttgtcagATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAG
EST: gi|27578288|gb|CB000983.1|CB000983
EST:     AAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAG                         ATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAG
genomic: AAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAGgtgtgtattc ... ttgttgtcagATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAG
EST: gi|27578255|gb|CB000950.1|CB000950
EST:     AAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAG                         ATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAG
genomic: AAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAGgtgtgtattc ... ttgttgtcagATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAG
EST: gi|58678110|gb|CK066797.1|CK066797
EST:     AAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAG                         ATGTTATACTGGATCCTTTGCTCGCTTTCAGGAATGAACTGAAAG
genomic: AAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAGgtgtgtattc ... ttgttgtcagATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAG
EST: gi|218482631|gb|FG947596.1|FG947596
EST:     AAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAG                         ATGTTATACTGGATCCTTTGCTCGCTTTCAGGAATGAACTGAAAG
genomic: AAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATATTTATCACAAGgtgtgtattc ... ttgttgtcagATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAG