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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAACGAGGGCACCACAAATACTGGGGTACCAGAATGTTCAAATATGATGATATTGATGTTCTACACTTCTTATTGTCTAATTTAAATTGgtaaaatctaagcatatgctttcatgctgctgtcttatgttccgaatactatcaaaatttgattcttttctgttctataatctaccagtaacttaaggacatctggctaattttactag

Basic information

species Oryza sativa
transcript LOC_Os06g26234.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g26234.1 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv19s0090g00920.t01 (Vitis vinifera), 5'ss of exon 9
GAAAACGAGGGCACCACAAATACTGGGGTACCAGAATGTTCAAATATGATGATATTGATGTTCTACACTTCTTATTGTCTAATTTAAATTGgtaaaatctaagcatatgctttcatgctgctgtcttatgttccgaatactatcaaaatttgat-tcttttctgttctataatc-taccagtaacttaaggacatctggctaattttactag
| |||||||| || ||||| |||||||||||||||||||||||||||| ||||  |||||| || || ||  |  | || ||||| ||||||||      ||| ||   |  |  || | | || |    |||  || | | |   | ||   | | | ||||| |  ||  |  |    | || |  |  |  |||               
GTAAACGAGGACATCACAAGTACTGGGGTACCAGAATGTTCAAATATGGTGATCCTGATGTGCTGCATTTTCTTCTCTCAAATTTGAATTGgtatg--tgaaggat---caatagtgtttcagtttctcattctcaacaatgtgggagttgcttgtatattctgcttgattcttgtttttgcaatt--aacatgtctt--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27554606|gb|CA998506.1|CA998506
EST:     AAATATGATGATATTGATGTTCTACACTTCTTATTGTCTAATTTAAATTG                         GTGGGTCACTGAATACCGTGTTGATGGATTCCAGTTTCACTCACTGCCTTC
genomic: AAATATGATGATATTGATGTTCTACACTTCTTATTGTCTAATTTAAATTGgtaaaatcta ... attttactagGTGGGTCACTGAATACCGTGTTGATGGATTCCAGTTTCACTCACTGCCTTC