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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGATTGCTTGGGTTGCACATATCGTCATATACTTGTTGATTGACCCTCCTTTGTCCTCCTTCCTGAATGAAATCTTCGTAAAATTGGATGGTGTTTGGGgtatatttctgttcattacattgttctgaactcgtcctattgatgacagtagcttgaccaatattctgttttctgtattag

Basic information

species Oryza sativa
transcript LOC_Os06g03760.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g03760.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM5G871262_T02 (Zea mays), 5'ss of exon 9
TCGATTGCTTGGGTTGCACATATCGTCATATACTTGTTGATTGACCCTCCTTTGTCCTCCTTCCTGAATGAAATCTTCGTAAAATTGGATGGTGTTTGGGgtatatttc---tgttcat--tacattgttctgaactcgtcctattgatgacagtagcttgaccaatattctgttttctgtattag
|| || |||||||||||||||||||||||||||||||||||||| |||||| | || || |||||||||||| ||||| |||| |||||||||||||||||||| ||     |  ||||  | || | || | ||||  |  |  |||||| |  |     |  ||| ||||  ||| ||||  ||
TCAATAGCTTGGGTTGCACATATCGTCATATACTTGTTGATTGATCCTCCTCTATCTTCTTTCCTGAATGAAGTCTTCATAAAGTTGGATGGTGTTTGGGgtatcttctgaattctcatcttccagtcttgtcaacttatggtgctgatgagaacaatccaattaatcttctaatttgtgtaccag

upper sequence: LOC_Os06g03760.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G012284_T01 (Zea mays), 5'ss of exon 7
TCGATTGCTTGGGTTGCACATATCGTCATATACTTGTTGATTGACCCTCCTTTGTCCTCCTTCCTGAATGAAATCTTCGTAAAATTGGATGGTGTTTGGGgtatatttctgttcattacattgttctgaactcgtcctattgatgacagtagctt-gaccaatattctgttttctgtattag
|| || ||||||||||||||||| |||||||||||||||||||| |||||| | || || |||||||||||| ||||| |||| ||||||||||||||||||||  ||||| || || |||| || | ||||  | ||  |||    |  |  ||  |  ||| ||||| ||| ||||  ||
TCAATAGCTTGGGTTGCACATATTGTCATATACTTGTTGATTGATCCTCCTCTATCTTCTTTCCTGAATGAAGTCTTCATAAAGTTGGATGGTGTTTGGGgtat-cttctgatc-ttccattcttgtcaacttatgctgctgagccgaacaaattcaattaatcttctgatttatgtaccag

upper sequence: LOC_Os06g03760.3 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 9
TCGATTGCTTGGGTTGCACATATCGTCATATACTTGTTGATTGACCCTCCTTTGTCCTCCTTCCTGAATGAAATCTTCGTAAAATTGGATGGTGTTTGGGgtat--------atttctgttcattacattgttctgaactcgtcctattgatgacagtagcttgaccaatattctgt-tttctgtattag
||  | |||||| |||| |||||||||||||| ||| ||||||| |||||| ||||  | ||| | |||||  | ||| | ||  | |||| ||| |||||||         |||| || |   |   || || |     | | |  | |||||   ||   |||    |||  |||  ||||   | ||
TCAGTGGCTTGGATTGCTCATATCGTCATATATTTGCTGATTGATCCTCCTCTGTCTCCTTTCTTAAATGAGGTTTTCATCAAGCTAGATGATGTCTGGGgtactgctatagatttttgctgtctctgttattttatttcctttcactagatgatcttattctgagatgtatcttgtacttcttcgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58684950|gb|CK073637.1|CK073637
EST:     TTTGTCCTCCTTCCTGAATGAAATCTTCGTAAAATTGGATGGTGTTTGGG                         GTCTGCTTGGGACTGCTGCCTTTGCATTCTTCTGTTTCTATCTCCTCATAG
genomic: TTTGTCCTCCTTCCTGAATGAAATCTTCGTAAAATTGGATGGTGTTTGGGgtatatttct ... tctgtattagGTCTGCTTGGGACTGCTGCCTTTGCATTCTTCTGTTTCTATCTCCTCATAG
EST: gi|55827892|gb|AU063117.2|AU063117
EST:     GTAAAATTGGATGGTGTTTGGG                         GTCTGCTTGGGACTGCTGCCTTTGCATTCTTCTGTTTCTATCTCCTCATAG
genomic: GTAAAATTGGATGGTGTTTGGGgtatatttct ... tctgtattagGTCTGCTTGGGACTGCTGCCTTTGCATTCTTCTGTTTCTATCTCCTCATAG