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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataagaaatggacaaaatgccatgttatctgtatctgttctttttcttggttctttgtttggaaagatagatagatgtggttatgtgggtcgtaatccaagttttgttacttttgatag

Basic information

species Oryza sativa
transcript LOC_Os06g02380.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g02380.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G095252_T02 (Zea mays), 5'ss of exon 3
GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataagaaatggacaaaatgccatgttatctgtatctgttctttttcttggttctttgtttggaaagatagatagatg-tggttatgtgggtcgtaatccaagttttgttacttttgatag
|| || ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||  |  ||| |  ||| |   | || ||     ||| |||||    |  |  | | ||| ||| || | |  |  |||| ||| ||        ||||  ||  | | ||      ||| ||
GCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCAAAGCTTGCTGGTGGTGTTGCTGTCATTCAGgtat--tgtgaagtacacagatcacaatttttgtgttatttgttcgacgttctt-tccattgattg-aatgttgtaaggatggtggata-----actgtaagtcatatctggtgttgcctgacag

upper sequence: LOC_Os06g02380.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G083716_T04 (Zea mays), 5'ss of exon 8
GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataagaaatggacaaaatgccatgt--tatctgtatc-tgttctttttcttggttctttgtttggaaagatagatagatgtggttatgtgggtcgtaatccaagttttgttacttttgatag
|| || ||||||||||| || ||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||  ||  ||| |  ||     || ||||  ||| |||    |||||||||  | | |||  ||||             || | ||||   |     | |||| || || | |      |||| ||
GCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGCTTGCTGGCGGTGTTGCTGTCATTCAGgta--atgtgaagtccacgggtcgcaatgtgttatttgttcaatgttcttttcatcgattcaatgtt-----------gcaggtatggtg--gataaccataattcatgtatggcgttgcttgacag

upper sequence: LOC_Os06g02380.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G083716_T05 (Zea mays), 5'ss of exon 7
----------------------GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataagaaatggacaaaatgccatgt--tatctgtatc-tgttctttttcttggttctttgtttggaaagatagatagatgtggttatgtgggtcgtaatccaagttttgttacttttgatag
                      || || ||||||||||| || ||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||  ||  ||| |  ||     || ||||  ||| |||    |||||||||  | | |||  ||||             || | ||||   |     | |||| || || | |      |||| ||
TTTTTATGAACCTAATTTGCAGGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGCTTGCTGGCGGTGTTGCTGTCATTCAGgta--atgtgaagtccacgggtcgcaatgtgttatttgttcaatgttcttttcatcgattcaatgtt-----------gcaggtatggtg--gataaccataattcatgtatggcgttgcttgacag

upper sequence: LOC_Os06g02380.2 (Oryza sativa), 5'ss of exon 9
lower sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 9
GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataagaaatggacaaaatgccatgttatctgtatctgttctttttcttggttctttgtttggaaagatagatagatgtggttatgtgggtcgtaatccaagttttgttacttttgatag--
   || || ||||| ||||||||||||||  | |||||||| ||||| |||||  ||||||| ||||| || ||||||||| ||||  ||    |   |                          |||||||| | | | |       ||||||   ||   |||| |||     ||||  |||||||   |  || | ||   
CAAGCGGAGCAAGACTACGAGAAGGAAAAATTAAATGAGAGAATTGCGAAGCTCTCTGGTGGAGTTGCTGTAATTCAGgtaaaatagtaatcacatgga-------------------------ctttcttggatttgtat-------gatagaagaata-agttaagtgatc--taattaaagtttttacatcttggttaaag

upper sequence: LOC_Os06g02380.2 (Oryza sativa), 5'ss of exon 9
lower sequence: AT1G55490.2 (Arabidopsis thaliana), 5'ss of exon 9
GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataagaaatggacaaaatgccatgttatctgtatctgttctttttcttggttctttgtttggaaagatagatagatgt-ggttatgtgggtcgtaatccaagttttgttacttttgatag
   || || ||||| ||||||||||| || ||||||||||| |||||||||||  ||||||| ||||| || ||||||||| | ||| || |    ||  | ||   || ||||  |  | | | ||||   | | ||   ||   ||| | | ||  | | |||||                                    
CAAGCGGAGCAAGATTACGAGAAGGAGAAACTCAATGAGAGAATTGCAAAGCTCTCTGGTGGAGTTGCTGTGATTCAGgtaaactaaaaactatttaagtttcct--ttgtctgattaagatgtgtttcagagatattaagtt---aagctcgttatgtattggttaaag---------------------------------

upper sequence: LOC_Os06g02380.2 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv09s0002g03930.t01 (Vitis vinifera), 5'ss of exon 8
GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataagaaatggacaaaatgccatgttatctgtatctgttctttttcttggttctttgtttggaaagatagatagatgtggttatgtgggtcgtaatccaagttttgttacttttgatag-
|| || || || || || || || || ||||| ||||| || |||||||| ||| | ||||||||||| ||||||||||||                 | |    | ||   |  ||    | |   | ||||||  | | | | |     | |    |||  || | |      || |  || ||||||         |   
GCAGCAGATCAGGACTATGAAAAAGAGAAGCTTAATGAAAGAATTGCAAAACTTTCAGGTGGTGTTGCTGTCATTCAGgta-----------------atttttttttttcttaaatacaatgtagctgttggttgatagatggaattctgaaagtattgttcttttctacccactattttaatttttgtgttgcacattcag

upper sequence: LOC_Os06g02380.2 (Oryza sativa), 5'ss of exon 9
lower sequence: PP1S14_298V6.1 (Physcomitrella patens), 5'ss of exon 6
----------------------GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataagaaatggacaaaatgccatgttatctgtatctgttctttttcttggttctttgtttggaaagatagatagatgtggttatgtgggtcgtaatccaagttttgttacttttgatag--------------------------------------------------------------------------
                      |  ||||| ||||| || |||||||| ||||| |||||||||||||| |||||  |||| || || ||  | ||||||||||  |   |  |  |  || |     | |    |  |       | |  || | |   ||||    | ||   ||| || |     ||| | |  || |  |||  |   ||  | ||||                                                                            
CCAAATCCGCAACCTAATCGAAGTCGCCGAGCAAGAGTATGAGAAGGAGAAGCTGAATGAGAGGATTGCGAAGCTGTCTGGGGGAGTAGCCATTATTCAGgtattttcttatttacattaactctttggctcgtcgggttaacgaatctcttttgata--tgttatacacgaactatatat-tcaccttgtcgattctattttaagcatacctaaatgtgattaggctcttctttcgttgaccgtggtaaaatgatgtggaagataaatcttcggtaagtcgtaactgttatttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29627635|gb|CB632646.1|CB632646
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29625231|gb|CB630242.1|CB630242
EST:     GATTGCAAAGCTTGCTGGTGGGGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: GATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29622749|gb|CB627760.1|CB627760
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|7212768|gb|D46006.2|D46006
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|58670426|gb|CK059112.1|CK059112
EST:     TTGCAATCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: TTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29673297|gb|CB669572.1|CB669572
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29661803|gb|CB658078.1|CB658078
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|6934900|gb|AU082437.1|AU082437
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACT
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACT
EST: gi|29618035|gb|CB623047.1|CB623047
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29657689|gb|CB653964.1|CB653964
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29615270|gb|CB620282.1|CB620282
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29625766|gb|CB630777.1|CB630777
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29683173|gb|CB679448.1|CB679448
EST:     TGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: TGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29624254|gb|CB629265.1|CB629265
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29680784|gb|CB677059.1|CB677059
EST:     GTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: GTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29627873|gb|CB632884.1|CB632884
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29616041|gb|CB621053.1|CB621053
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29628205|gb|CB633216.1|CB633216
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29689313|gb|CB685588.1|CB685588
EST:     GTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: GTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|218493375|gb|FG949729.1|FG949729
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTANAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29614381|gb|CB619394.1|CB619394
EST:     TGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: TGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|701315|gb|D47606.1|D47606
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29658823|gb|CB655098.1|CB655098
EST:     AGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29657719|gb|CB653994.1|CB653994
EST:     GAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: GAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29617291|gb|CB622303.1|CB622303
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|58602788|gb|CK013316.1|CK013316
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29616042|gb|CB621054.1|CB621054
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
EST: gi|29626463|gb|CB631474.1|CB631474
EST:     AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG                         GTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG
genomic: AGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 193

GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataag ... cttttgatagGTGGGAGCACAAACAGAGACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCTACCAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGgtataataagaaatggacaaaatgccatgttatctgtatctgttctttttcttggttctttgtttggaaagatagatagatgtggttatgtgggtcgtaatccaagttttgttacttttgatag

- - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG