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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACATAGAGGAAATTATTGTCTCGGCAGTCTCGTATCATATGATTCACAACAAGGATCCTGAATACAAAAATGGGAAGCTTGTTCTATCATCTAAAAGgttcaatcaaatttgtcttgataagttgatattcagtaaataattactttctgttcttattttctcagtacaactattttacag

Basic information

species Oryza sativa
transcript LOC_Os05g50750.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g50750.3 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G013115_T02 (Zea mays), 5'ss of exon 9
ATTACATAGAGGAAATTATTGTCTCGGCAGTCTCGTATCATATGATTCACAACAAGGATCCTGAATACAAAAATGGGAAGCTTGTTCTATCATCTAAAAGgttcaatcaaatttgtcttgataagttgatattcagtaaataattactttctgttcttattttctcagtacaactattttacag
||||||||||||| || || || || || ||||| || ||  |||||||||||||||| ||||||||||  ||||| |||||  | |||||||||||||||||   |||   |  |  ||||   ||  |   |  |   |  ||   ||        ||  |     || |  | ||||||||
ATTACATAGAGGAGATCATCGTATCAGCTGTCTCCTACCACTTGATTCACAACAAGGACCCTGAATACAGGAATGGAAAGCTCATGCTATCATCTAAAAGgtt-ggtca--ctgattctgat---ttctttccccct---tttttgtcttggagagcaataat----ataaatttcttttacag

upper sequence: LOC_Os05g50750.3 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv02s0025g00650.t01 (Vitis vinifera), 5'ss of exon 9
ATTACATAGAGGAAATTATTGTCTCGGCAGTCTCGTATCATATGATTCACAACAAGGATCCTGAATACAAAAATGGGAAGCTTGTTCTATCATCTAAAAGgttcaatcaaatttgtcttgataagttgatattcagtaaat-aattactttctgttcttattttctcagtacaactattttacag
| |||||||| |||||| | || || ||||| || |||||| ||||  | ||||| |||| |||||||||||||||||| |||||| | ||||| || |||||  || | | |  |||| |   |||  |  ||| ||  | ||||| |    || || ||  |    ||    ||||   ||||
ACTACATAGAAGAAATTGTGGTGTCAGCAGTTTCTTATCATTTGATGAATAACAAAGATCATGAATACAAAAATGGGAAACTTGTTATTTCATCCAAGAGgttagattatagtgttctttaatggtt--ttctcaatatgttaattagtag--gtactcatcat----gtttggctatgaaacag