1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AGAACAGTTCAATCATCACGGAGGAGGACGACAATACGATTTGCAGATATCAAGCAGAAGAGATATAGTGTACCTCTAATGgtttgttgcttccaattatatatttttttctctgataccttattgttcctttttttgcttactgtttttatctcttcag
species | Oryza sativa |
transcript | LOC_Os05g50280.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAATACGATTTGCAGATATCAAGCAGAAGAGATATAGTGTACCTCTAATG ATAGGAATTGGTCTCCTTGTACTGCAGCAGTTAAGTGGTGTGAATGGCATTEST: gi|218482029|gb|FG948463.1|FG948463
genomic: CAATACGATTTGCAGATATCAAGCAGAAGAGATATAGTGTACCTCTAATGgtttgttgct ... atctcttcagATAGGAATTGGTCTCCTTGTACTGCAGCAGTTAAGTGGTGTGAATGGCATT
EST: CAATACGATTTGCAGATATCAAGCAGAAGAGATATAGTGTACCTCTAATG ATAGGAATTGGTCTCCTTGTACTGCAGCAGTTAAGTGGTGTGAATGGCATTEST: gi|701858|gb|D48149.1|D48149
genomic: CAATACGATTTGCAGATATCAAGCAGAAGAGATATAGTGTACCTCTAATGgtttgttgct ... atctcttcagATAGGAATTGGTCTCCTTGTACTGCAGCAGTTAAGTGGTGTGAATGGCATT
EST: CAATACGATTTGCAGATATCAAGCAGAAGAGATATAGTGTACCTCTAATG ATAGGAATTGGTCTCCTTGTACTGCAGCAGTTAAGTGGTGTGAATGGCATT
genomic: CAATACGATTTGCAGATATCAAGCAGAAGAGATATAGTGTACCTCTAATGgtttgttgct ... atctcttcagATAGGAATTGGTCTCCTTGTACTGCAGCAGTTAAGTGGTGTGAATGGCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAACAGTTCAATCATCACGGAGGAGGACGACAATACGATTTGCAGATATCAAGCAGAAGAGATATAGTGTACCTCTAATGgtttgttgcttccaattatatatttttttctctgataccttattgttcctttttttgcttactgtttttatctcttcag
- - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA