1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGGTGGATCGCTTCAAGCGTCAATTCGCTCATTTGGAGGAAGGAGTTTCAAAGGGTGAAAAATCCAGTCCACAGCTTCGGCAGAATGCTTCCTTACCAAGgtaatatacaatcacccctgaaatatgtctttgtatatgtagtgagccagatagcaactggagacggggactgctaatgcgcgggtgatcgctgggacca...
species | Oryza sativa |
transcript | LOC_Os05g50120.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAGGGTGAAAAATCCAGTCCACAGCTTCGGCAGAATGCTTCCTTACCAAG GGAAAGAGCAATTGGTAACAAGCATGGAGATGACGAGTACCACGCAAAGCTEST: gi|86477826|gb|CI120459.1|CI120459
genomic: AAGGGTGAAAAATCCAGTCCACAGCTTCGGCAGAATGCTTCCTTACCAAGgtaatataca ... cttttttcagGGAAAGAGCAATTGGTAACAAGCATGGAGATGACGAGTACCACGCAAAGCT
EST: AAGGGTGAAAAATCCAGTCCACAGCTTCGGCAGAATGCTTCCTTACCAAG GGAAAGAGCCATTGGTAACAAGCATGGAGATGACGAGTACCACGCAAAGCTEST: gi|58594497|gb|CF992805.1|CF992805
genomic: AAGGGTGAAAAATCCAGTCCACAGCTTCGGCAGAATGCTTCCTTACCAAGgtaatataca ... cttttttcagGGAAAGAGCAATTGGTAACAAGCATGGAGATGACGAGTACCACGCAAAGCT
EST: AAGGGTGAAAAATCCAGTCCACAGCTTCGGCAGAATGCTTCCTTACCAAG GGAAAGAGCAATTGGTAACAAGCATGGAGATGACGA
genomic: AAGGGTGAAAAATCCAGTCCACAGCTTCGGCAGAATGCTTCCTTACCAAGgtaatataca ... cttttttcagGGAAAGAGCAATTGGTAACAAGCATGGAGATGACGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTGGATCGCTTCAAGCGTCAATTCGCTCATTTGGAGGAAGGAGTTTCAAAGGGTGAAAAATCCAGTCCACAGCTTCGGCAGAATGCTTCCTTACCAAGgtaatatacaatcacccctgaaatatgtctttgtatatgtagtgagccagatagcaactggagacggggactgctaatgcgcgggtgatcgctgggacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgcggg